Table 1.
Summary of identified SNPs in orthologous loci
| SNP summarya | T. alpinus | T. amoenus | T. ruficaudus | T. striatus | |
|---|---|---|---|---|---|
| Fixed |
Synonymous |
- |
5812 |
5579 |
13984 |
| Non-synonymous |
- |
1617 |
1616 |
3217 |
|
| Intron |
- |
2286 |
2222 |
2097 |
|
| UTR |
- |
523 |
515 |
447 |
|
| Total |
- |
10238 |
9932 |
19745 |
|
| Polymorphic |
Synonymous |
880 |
2426 |
2625 |
1969 |
| Non-synonymous |
512 |
860 |
892 |
633 |
|
| Intron |
636 |
1052 |
1202 |
339 |
|
| UTR |
173 |
277 |
284 |
77 |
|
| Total |
2201 |
4615 |
5003 |
3018 |
|
| Total difference |
Synonymous (%) |
880 (40.0) |
8238 (55.5) |
8204 (54.9) |
15953 (70.1) |
| Non-synonymous (%) |
512 (23.2) |
2477 (16.7) |
2508 (16.8) |
3850 (16.9) |
|
| Intron (%) |
636 (28.9) |
3338 (22.5) |
3424 (22.9) |
2436 (10.7) |
|
| UTR (%) |
173 (7.9) |
800 (5.4) |
799 (5.3) |
524 (2.3) |
|
| Total (%) | 2201 (100) | 14853 (100) | 14935 (100) | 22763 (100) | |
a Sequence reads of each species were aligned to the in-target assemblies of T. alpinus to estimate the level of genetic variability in the orthologous markers.