Table 1.

Genes in Regions with Signals of Selection.

Chromosome	Genes	Gene annotation	Test
2	PFB0935w¹	Cytoadherence-linked asexual protein 2	iHS
4	PFD0260c	Sequestrin	iHS
4	PFD0735c^a	Conserved Plasmodium protein, unknown function	iHS
4	Intergenic		REHH
6	PFF1335c	4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme	Both
	PFF1350c	Acetyl-coenzyme a synthetase
	PFF1365c	HECT-domain (ubiquitin transferase), putative
	PDD1460c	Conserved Plasmodium protein, unknown function
	PFF1470c	DNA polymerase epsilon, catalytic subunit a, putative
7	PF07_0035	Cg1 protein	Both
	PF07_0036	Cg6 protein
	PF07_0038^a	Cg7 protein
	MAL7PI_28^a	pfcrt; chloroquine resistance transporter
	PF07_0042	Conserved Plasmodium protein, unknown function
7	PF07_0053	Conserved Plasmodium protein, unknown function	iHS
11	PF11_0344	Apical membrane antigen 1 precursor, AMA1	iHS
13	PF13_0074	Surface-associated interspersed gene 13.1 (SURFIN13.1)	iHS
13	PF13_0201^a	Sporozoite surface protein 2	iHS
14	PF14_0726	Conserved Plasmodium protein, unknown function	iHS

^aGenes that are no longer significant if double Bonferroni correction applied.