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. 2012 Jul 24;29(11):3427–3439. doi: 10.1093/molbev/mss161

Table 2.

Empirical Nucleotide Transition Matrices.

A T C G
Four-fold degenerate sites
    A 0.9905 0.0033 0.0020 0.0043
    T 0.0033 0.9903 0.0043 0.0021
    C 0.0078 0.0154 0.9717 0.0051
    G 0.0141 0.0062 0.0043 0.9754
Intergenic regions
    A 0.9947 0.0028 0.0007 0.0019
    T 0.0028 0.9945 0.0020 0.0007
    C 0.0042 0.0084 0.9853 0.0020
    G 0.0085 0.0042 0.0021 0.9852