Table 1.

PM-resistance related genes isolated from the SSH library in V. quinquangularis.

Unigene No.	Length (bp)	Putative Function	Organism of Best Homology	Accession No.	E-Value
Metabolism (19)
UN018	706	Abscisic stress ripening protein	V. pseudoreticulata	ABC86744	5 × 10−21
UN022	548	GDP-d-glucose phosphorylase	A. thaliana	NP_200323	2 × 10−19
UN044 a	562	S-adenosylmethionine synthetase	R. communis	XP_002512570	4 × 10−101
UN102	369	ATP-dependent peptidase/ATPase/metallopeptidase	A. thaliana	NP_564563	3 × 10−59
UN127	829	Malate dehydrogenase	N. tabacum	CAC12826	3 × 10−139
UN145	540	Putative cinnamoyl-CoA reductase	R. communis	XP_002533639	4 × 10−19
UN173	250	ATP-dependent peptidase/ATPase/metallopeptidase	A. thaliana	NP_568604	9 × 10−6
UN178	592	GDSL-motif lipase/hydrolase family protein	A. thaliana	NP_190416	7 × 10−59
UN183	452	Malate dehydrogenase	V. vinifera	AAF69802	6 × 10−75
UN230	247	Aldo/keto reductase, putative	R. communis	XP_002535506	8 × 10−18
UN240	416	S-adenosylmethionine-dependent methyltransferase	A. thaliana	NP_173458	2 × 10−63
UN262	443	HMGB3 (High mobility group B 3)	A. thaliana	NP_001031075	3 × 10−27
UN266	558	NADH dehydrogenase subunit 2	A. thaliana	NP_085584	5 × 10−16
UN035	395	Naringenin-chalcone synthase	Humulus lupulus	CAK19317	2 × 10−45
UN040	645	Cinnamate-4-hydroxylase	Canarium album	ACR10242	2 × 10−99
UN118	204	Flavonol synthase	V. vinifera	BAE75808	1 × 10−26
UN166	333	Phenylalanine ammonia-lyase	Camellia oleifera	ACT21093	8 × 10−50
UN182 a	616	Chalcone-flavanone isomerase	A. thaliana	NP_568154	8 × 10−41
UN260 a	307	Phenylalanin ammonia-lyase	V. vinifera	ABM67591	3 × 10−25
Photosynthesis and Energy (15)
UN001	618	Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1	Acer rubrum	ABI94077	2 × 10−108
UN017	562	Ribulose bisphosphate carboxylase/oxygenase activase 1	R. communis	XP_002532996	2 × 10−89
UN020	455	Photosystem I reaction center subunit II, chloroplast precursor	R. communis	XP_002516772	4 × 10−56
UN023	624	Photosystem II 22 kDa protein, chloroplast precursor	R. communis	XP_002513761	1 × 10−68
UN025	438	Ribulose bisphosphate carboxylase/oxygenase activase 1	R. communis	XP_002532996	3 × 10−73
UN052	365	Chloroplast photosystem II 10 kDa polypeptide	Jatropha curcas	ADB93062	4 × 10−41
UN086	255	Photosystem I reaction center subunit II, chloroplast precursor	R. communis	XP_002516772	3 × 10−17
UN093	298	Putative fructose-1,6-bisphosphatase	R. communis	XP_002527886	3 × 10−28
UN095	348	Ribulose-1,5-bisphophate carboxylase/oxygenase activase 1	V. pseudoreticulata	ABC86738	5 × 10−47
UN098	571	Putative fructose-bisphosphate aldolase	R. communis	XP_002512993	2 × 10−100
UN106	268	Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1	Gossypium hirsutum	ABB20913	2 × 10−20
UN121	371	Chlorophyll A/B binding protein	R. communis	XP_002533251	1 × 10−45
UN198	312	Light harvesting chlorophyll a/b-binding protein	Nicotiana sylvestris	BAA25394	2 × 10−35
UN241	189	Light-harvesting complex II protein Lhcb1	Populus trichocarpa	XP_002307725	4 × 10−11
UN255	324	Chlorophyll A/B binding protein	R. communis	XP_002519950	5 × 10−44
Disease/Defence (22)
UN016	477	Stress-induced cysteine proteinase	Lavatera thuringiaca	AAB62937	4 × 10−66
UN033	427	Similar to pathogenesis-related protein 10.3	V. vinifera	XP_002274617	1 × 10−51
UN040	645	Cytochrome P450	Populus trichocarpa	XP_002325637	3 × 10−98
UN073 a	351	Thaumatin-like protein	V. vinifera	AAQ10092	7 × 10−67
UN075	346	Glutathione S-transferase 3	Papaver somniferum	AAF22519	1 × 10−8
UN077	450	Chaperone protein dnaJ	R. communis	XP_002514419	3 × 10−68
UN079	294	Responsive to dehydration 19	A. thaliana	NP_568052	2 × 10−43
UN096	755	Lipid transfer protein isoform 4	V. vinifera	AAO33394	3 × 10−47
UN170	468	Lipid transfer protein family protein	Tamarix hispida	ACM78616	6 × 10−8
UN205	470	Lipid transfer protein family protein	A. thaliana	NP_680546	5 × 10−31
UN226	537	Lipid transfer protein family protein	A. thaliana	NP_565348	2 × 10−33
UN115	574	Bacterial-induced peroxidase precursor	G. hirsutum	AAD43561	1 × 10−71
UN116 a	769	Similar to senescence-associated protein	A. thaliana	BAD42919	3 × 10−70
UN119	698	Catalase 1	N. tabacum	AAB71764	2 × 10−80
UN174 a	443	Class IV chitinase	N. tabacum	BAF44533	3 × 10−41
UN179	318	Proline-rich protein	Solanum tuberosum	CAA04449	1 × 10−22
UN209	212	Harpin-induced family protein	A. thaliana	NP_190008	1 × 10−22
UN219	341	Responsive to dehydration 21	A. thaliana	NP_564497	2 × 10−44
UN233	465	Proline-rich protein	G. hirsutum	ABM05952	2 × 10−16
UN239	240	Chitinase-like protein	G. hirsutum	AAQ56598	2 × 10−35
UN058	474	2OG-Fe(II) oxygenase family protein	A. thaliana	NP_192787	1 × 10−50
UN043	581	Ascorbate peroxidase 3	A. thaliana	NP_195226	4 × 10−67
Protein synthesis and fate (7)
UN004	372	40S ribosomal protein S17	A. thaliana	NP_196100	1 × 10−41
UN010	252	26S proteasome regulatory subunit	A. thaliana	AAP86657	2 × 10−39
UN134 a	468	Coronatine insensitive 1 (COI1)	A. thaliana	ABR45948	2 × 10−47
UN135 a	356	F-box family protein	A. thaliana	NP_199429	2 × 10−31
UN203 a	784	Jasmonate ZIM-domain protein 2	N. tabacum	BAG68656	5 × 10−43
UN214	352	Putative 40S Ribosomal protein	O. sativa	AAK92638	3 × 10−39
UN254	229	Aspartyl protease family protein	A. thaliana	NP_566966	3 × 10−15
Signal transduction (8)
UN005	653	Putative zinc finger protein	O. sativa	BAD87736	1 × 10−24
UN008	415	CIPK2; protein serine/threonine kinase	A. thaliana	NP_196324	2 × 10−11
UN031	410	Serine/threonine phosphatase	A. thaliana	NP_188632	5 × 10−29
UN151	332	CIPK21; protein serine/threonine kinase	A. thaliana	NP_568860	3 × 10−29
UN211	636	Lipid phosphate phosphatase 3	A. thaliana	NP_001078096	2 × 10−35
UN216	447	GTP binding/phospholipase activator	A. thaliana	NP_191788	1 × 10−79
UN217	508	Rab-type small GTP-binding protein	Cicer arietinum	BAA76423	2 × 10−49
UN238	543	Phosphoribulose kinase, putative	R. communis	XP_002519002	3 × 10−82
Transport (12)
UN011	324	NRAMP3; transmembrane transporter	A. thaliana	NP_179896	6 × 10−45
UN029	862	Plasma membrane aquaporin	V. vinifera	AAF80557	2 × 10−148
UN030	910	Antiporter/triose-phosphate transmembrane transporter	A. thaliana	NP_851138	1 × 10−144
UN042	584	Putative sorbitol transporter	Prunus cerasus	AAM44082	7 × 10−91
UN067	647	Non-specific lipid transfer protein	V. vinifera	ABA29446	2 × 10−36
UN088	249	Plasma membrane intrinsic protein	A. thaliana	AAB65787	3 × 10−38
UN129	401	ABC transporter family protein	Populus trichocarpa	XP_002331473	6 × 10−60
UN136	478	ABC transporter-like	A. thaliana	BAF01914	3 × 10−83
UN231	565	ABC transporter family protein	Populus trichocarpa	XP_002308160	7 × 10−56
UN164	509	Polyol transporter	Populus trichocarpa	XP_002313809	4 × 10−68
UN223	269	Nitrate transporter	Malus hupehensis	ACN72639	2 × 10−34
UN221	329	Solute symporter family protein	A. thaliana	NP_199351	5 × 10−42
Transcription (4)
UN014	517	Transcription activator/transcription factor	A. thaliana	NP_197904	2 × 10−18
UN064	446	Transcript elongation factor	A. thaliana	NP_181390	5 × 10−27
UN065	443	IAA16; transcription factor	A. thaliana	NP_187124	3 × 10−46
UN167	430	DNA binding/transcription factor	A. thaliana	NP_172094	1 × 10−21

^aClones selected for further qRT-PCR analysis are marked with an asterisk.