Table 2. Candidate targets with predicted BART miRNA binding sites.
Gene | Predicted miRBARTs binding sites in the 3′UTR |
CFL1 | 6-3p, 19-3p |
CNBP1* | 19-5p, 9, 3, 5 |
EIF5A | 6-3p |
GSNS1 | 11-3p (6 sites) |
HSPA5 | 12, 1-3p |
HSPA9 | 17-3p, 17-5p |
NAP1L1* | 12, 19-3p, 1-5p, 20-3p |
PDIA3 | 14, 6-3p |
PGAM1 | 11-3p |
RPLP2 | 19-3p |
SET1* | 13, 6-5p |
SFRS1* | 1-5p |
TCP1 | 12 |
CFL1 | 6-3p, 19-3p |
Gene with predicted miRBARTs, which are expressed at high levels in BJAB BARTs cells relative to that in BJAB Empty cells, binding sites in its 3′UTR.
A list of 13 candidates identified as putative targets which have predicted BART miRNA binding sites in the 3′ UTRs, along with the miRNAs predicted to target these transcripts are shown (*represent candidates selected for further validation).