Table 2.
The MATT alignment of three structures of DNA polymerase I indifferent conformations
| 480 | 490 | 500 | 510 | 520 | ||
|---|---|---|---|---|---|---|
|
1KTQ |
GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRS-------TSAA----VLEALREAH |
|
||||
|
2KTQ |
GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH |
(a) |
||||
|
3KTQ |
GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH |
|
||||
| |
-H1----- |
|
-H2--- |
|
||
|
640 |
650 |
660 |
670 |
680 |
690 |
|
|
1KTQ |
EGRDIHTETASWMFGVPREAV---------------D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS |
|
||||
|
2KTQ |
EGRDIHTETAS----------WMFGVPREAV-----D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS |
(b) |
||||
|
3KTQ |
EGRDIHTETAS--------------------WMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS |
|
||||
| |
----N----- |
|
----O------- |
--O1-- |
--O2---------- |
|
| |
710 |
|
740 |
|
|
|
|
1KTQ |
TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF |
|
||||
|
2KTQ |
TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF |
(c) |
||||
|
3KTQ |
TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF |
|
||||
| -P------ | -10 | -11 | -------Q------------------------ | |||