Table 3.
Number of SNPs shared and differential between groups
| Piel de Sapo | Inodorus | Melo | Cantalupensis | Momordica | Conomon | Agrestis acidulus | African agrestis | |
|---|---|---|---|---|---|---|---|---|
| |
Pool8 |
Pool7 |
Pool6 |
Pool5 |
Pool4 |
Pool3 |
Pool2 |
Pool1 |
|
Piel de Sapo |
|
15,560 |
9,149 |
19,451 |
21,566 |
14,168 |
14,488 |
18,172 |
| Pool8 |
|
(36/20) |
(21/22) |
(45/19) |
(50/16) |
(33/17) |
(33/15) |
(42/16) |
|
inodorus |
1,564 |
|
16,255 |
33,966 |
40,668 |
25,165 |
26,914 |
32,236 |
| Pool7 |
|
|
(20/40) |
(43/33) |
(51/31) |
(32/31) |
(34/28) |
(41/26) |
|
melo |
3, 260 |
2,722 |
|
19,727 |
23488 |
13,541 |
15,589 |
17,157 |
| Pool6 |
|
|
|
(19/48) |
(58/18) |
(33/17) |
(38/16) |
(42/15) |
|
cantalupensis |
4,735 |
4,353 |
3, 178 |
|
52,514 |
31,461 |
34,510 |
39,016 |
| Pool5 |
|
|
|
|
(51/40) |
(31/39) |
(34/36) |
(38/33) |
|
momordica |
4,441 |
4, 484 |
2, 417 |
4,224 |
|
38,384 |
47,491 |
46,865 |
| Pool4 |
|
|
|
|
|
(47/29) |
(49/36) |
(40/35) |
|
conomon |
19,942 |
20,281 |
12,628 |
14,978 |
9,576 |
|
27,670 |
33,783 |
| Pool3 |
|
|
|
|
|
|
(29/34) |
(35/29) |
|
agrestis-acidulus |
11,402 |
12,009 |
6,837 |
9,577 |
5,273 |
6,474 |
|
36,162 |
| Pool2 |
|
|
|
|
|
|
|
(44/31) |
|
Africanagrestis |
20,501 |
20,931 |
14,132 |
18,294 |
13, 070 |
21,490 |
11,180 |
|
| Pool1 |
Numbers in the upper half of the table indicate the number of common SNPs between each pair of libraries. Numbers in brackets indicate percentages these common SNPs represent of the total SNP set detected within the corresponding library (row/column). For example, there are 15,560 SNPs common between pools 8 and 7 (that is with two alleles or more in each of these pools). This number represents the 36% and 20% of the total SNPs detected within Pool 8 and pool 7 (indicated in Table 2) respectively.
Numbers in the lower part of the table indicate the SNPs that are fixed within each pair of libraries, but polymorphic between them. For example, there are 1,564 SNPs for which all reads from pool 8 have one allele and all reads from pool 7 have the alternative allele.