Table 1.
Genetic diversity values for SNPs across the 401 accessions of the common bean wild (104 accessions) and cultivated (297 accessions) collections
| Gene | Set of sequences | SNP | Position consensus | SNP type | Majority allele | Minority allele | Majority allele frequency | Minority allele frequency | PIC* |
|---|---|---|---|---|---|---|---|---|---|
|
Asr1 |
Cultivated |
1 |
621 |
[T/C] |
T |
C |
0.56 |
0.44 |
0.49 |
| Wild intron |
1 |
57 |
[A/C] |
A |
C |
0.91 |
0.09 |
0.17 |
|
| 2 |
68 |
[T/C] |
T |
C |
0.88 |
0.12 |
0.21 |
||
| Wild exon |
1 |
20 |
[T/C] |
C |
T |
0.97 |
0.03 |
0.05 |
|
| 2 |
161 |
[T/C] |
T |
C |
0.81 |
0.19 |
0.31 |
||
| 3 |
233 |
[T/C] |
C |
T |
0.84 |
0.16 |
0.27 |
||
| Asr2 | Total** |
1 |
24 |
[A/T] |
T |
A |
0.86 |
0.14 |
0.25 |
| 2 |
29 |
[T/G] |
G |
T |
0.86 |
0.14 |
0.25 |
||
| 3 |
127 |
[C/G] |
C |
G |
0.98 |
0.02 |
0.03 |
||
| Cultivated |
1 |
6 |
[A/T] |
A |
T |
0.93 |
0.07 |
0.12 |
|
| 2 |
26 |
[A/T] |
T |
A |
0.93 |
0.07 |
0.12 |
||
| 3 |
31 |
[T/G] |
G |
T |
0.93 |
0.07 |
0.12 |
||
| Wild | 1 |
247 |
[C/G] |
G |
C |
0.93 |
0.07 |
0.13 |
|
| 2 |
345 |
[A/C] |
C |
A |
0.62 |
0.38 |
0.47 |
||
| 3 | 350 | [A/T] | A | T | 0.62 | 0.38 | 0.47 |
* PIC values higher than 0.2 indicated in bold text, PIC values between 0.1 and 0.19 indicated in italics.**Polymorphic sites only observed in heterozygotes are not depicted.