Table 1.

Large genomic rearrangements in the GP3 and GP4 cancers

Event	Loci 1	Loci 2	Position 1	Position 2	Gene 1	Gene 2	#MP G3	#MP G4
t(1-12)a	1q32.3c	12q21.33a	213127619	89404575	VASH2	AK055062	11	21
t(1-12)b	1p36.13e	12p11.22a	17481805	30504168	no_gene	no_gene	0	3
t(2-14)	2q24.1c	14q32.12a	157595999	92919912	no_gene	SLC24A4	5	0
t(2-23)	2q35c	Xq22.3b	217539908	105359151	IGFBP5	no_gene	5	0
t(5-11)	5p13.1c	11q24.3b	38567230	129589054	LIFR	no_gene	3	0
t(7-17)	7p21.2a	17p13.1c	13910005	7973212	ETV1	ALOX12B	10	10
t(8-11)a	8q22.2b	11q13.2c	100826483	67861296	VPS13B	CHKA	4	3
t(8-11)b	8q22.2b	11q24.2b	100473404	125522385	VPS13B	CHEK1	2	15
t(17-19)a	17q22b	19q13.32a	53592582	45963102	no_gene	BCAM	1	9
t(7-19)b	17q21.31c	19q13.32a	43268092	45311607	no_gene	ERCC1	1	4
r(1-1)	1p33d	1p34.1b	47040276	46048889	MKNK1	NASP	2	7
r(2-2)a	2q13b	2q13b	111600477	111523813	ACOXL	ACOXL	10	10
r(2-2)b	2q13d	2q13b	113373061	111874072	no_gene	ACOXL	6	4
r(3-3)a	3p22.3b	3p22.3b	34811976	34726774	no_gene	no_gene	12	7
r(3-3)b	3q24c	3q11.2c	145684839	97497658	no_gene	ARL6	0	5
r(4-4)a	4q31.21c	4q24a	145217293	102291108	no_gene	(PPP3CA)	3	6
r(4-4)b	4q31.22a	4q27b	146813724	121967686	ZNF827	C4orf31	3	9
r(4-4)c	4q28.3h	4q24a	137887074	101807230	no_gene	no_gene	3	21
r(4-4)d	4q28.1c	4q27b	126358971	121952037	FAT4	no_gene	3	20
r(4-4)e	4q31.21c	4q24e	146126396	107031959	(OTUD4)	TBCKL	3	11
r(6-6)	6q16.3d	6q16.1e	104492242	97668534	no_gene	C6orf167	2	16
r(7-7)	7q36.2c	7q36.2b	154376229	154265528	DPP6	DPP6	1	5
r(8-8)a	8p23.1a	8p23.1c	12610164	10101851	LONRF1	MSRA	8	21
r(8-8)b	8p22e	8p23.1a	12718032	12607655	no_gene	LONRF1	3	19
r(9-9)	9q32d	9q32d	117100468	116868162	AKNA	(KIF12)	11	15
r(11-11)a	11q24.2b	11q13.2c	125525691	68317314	CHEK1	SAPS3	2	13
r(11-11)b	11q23.3e	11q23.1d	117933682	112273163	no_gene	no_gene	7	27
r(12-12)a	12q23.1d	12q23.1d	101157176	100665614	ANO4	SCYL2	0	7
r(12-12)b	12q21.1a	12q15d	71683589	71437383	(TSPAN8)	TSPAN8	1	11
r(23-23)	Xq25h	Xq25h	128603069	128566668	(SMARCA1)	SMARCA1	6	5