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. 2012 Sep 18;19(5):407–422. doi: 10.1093/dnares/dss022

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© The Author 2012. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — The average expression profiles of the genes in selected clusters over the 130 samples. x-axis shows samples, grouped according to the cell type (in order of presentation in Supplementary Table S1). y-axis shows mean signal expression intensity for the cluster (probe set intensity). Expression profiles of: (A) extracellular matrix-related gene clusters (cluster 13, red; cluster 51, blue); (B) phagocytes (green, cluster 24), B cells (red, cluster 22) and T cells (blue, cluster 31); (C) LTi cells (red, cluster 78) and natural helper cells (green, cluster 20); (D) Paneth cells (red, cluster 3; blue, cluster 34; yellow, cluster 80); (E) house-keeping (e.g. cell cycle) genes (dark blue, cluster 19; light blue, cluster 21; green, cluster 54); (F) RNA processing genes (cluster 16).