Table 3.
|
# Pathways complete/partial* |
Taxonomic Classification of Pathways |
||||
---|---|---|---|---|---|---|
DonnaII | ANAS | KB-1 | DonnaII | ANAS | KB-1 | |
LACTATE (ANAS) |
|
|
|
|
|
|
A - Lactate to Acetate via Pyruvate (3 genes) |
2/2 |
1/6 |
0/1 |
α-P, Firm/Act, BC |
Firm/α-P, BC, β-P, Cya, γ-P, Planc |
/γ-P |
B – Lactate to Ethanol (4 genes) |
2/2 |
1/5 |
0/1 |
α-P, Firm/Act, BC |
Firm/α-P, BC, β-P, Fib, γ-P |
/Fib |
C - L-lactate to Acetate directly (EC 1.13.12.4) |
0 |
0 |
0 |
|
|
|
BUTYRATE (DonnaII) |
|
|
|
|
|
|
To Acetyl-CoA and Acetoacetate (5–7 genes) |
4/8 |
2/6 |
1/2 |
δ-P, Firm, γ-P, β-P/Act, α-P, BC, Cflx, CrenA, EurA, Fib, Fus |
δ-P, Firm/Act, α-P, β-P, EurA, Fus, γ-P |
Firm/BC, δ-P |
METHANOL (KB-1) |
|
|
|
|
|
|
A - to Formaldehyde (ECs 1.1.99.8/1.11.1.6/1.11.1.7) |
9 |
6 |
6 |
Act, BC, β-P, DT, δ-P, ϵ-P, EurA, Firm, γ-P |
BC, β-P, δ-P, EurA, Firm, γ-P |
BC, β-P, δ-P, EurA, Firm, γ-P |
B - to Methyl-CoM, eventually to coenzyme M (4 genes) | 1 | 1 | 1 | EurA | EurA | EurA |
Abbreviations are as follows: Act = Actinobacteria, α/β/δ/ϵ/γ-P = Proteobacteria, BC = Bacteroidetes/Chlorobi group, Cya = Cyanobacteria, Cflx = Chloroflexi, CrenA = Crenarchaeota, Dhc = Dehalococcoides, DT = Deinococcus/Thermus group, EurA = Euryarchaeota, Fib = Fibrobacteres/Acidobacteria, Firm = Firmicutes, Fus = Fusobacteria, Planc = Planctomycetes, Therm = Thermotogae.
*partial – 40% or greater of pathway must be detected, for lactate to acetate conversions, initial step was required to be present.