Table A1.
Size (bp) of the alignedT-RF | Corresponding taxa in the identification library1 | Assignment | Enzymes used for quantification | ||
---|---|---|---|---|---|
HinP1I | Hpy8I | NlaIV | |||
584 | 811 | 236 | Carnobacterium divergens, C. maltaromaticum | Carnobacterium | All three |
370 | 800 | 196 | Enterobacteriaceae | Enterobacteriaceae | HinP1I |
605 | 841 | 256 | Lactobacillus oligofermentas | L. oligofermentas | HinP1I, NlaIV |
603 | 840 | 254 | Lactobacillus sakei, L. fuchuensis | Lactobacillus | HinP1I, NlaIV |
581 | 216 | 230 | Lactococcus spp. | CLactococcus | All three |
204 | 113 | 229 | Leuconostoc gelidum, L. mesenteroides | Leuconostoc | Hpy8I |
204 | 648 | 229 | Leuconostoc gasicomitatum, L. gelidum, L. carnosum | Leuconostoc | HinP1, NlaIV |
242 | 816 | 238 | Vagococcus fessus2 | Vagococcus | All three |
Vagococcus fessus DSM 15697T; T-RFs: HinP1I 242 bp, Hpy8I 814 bp, NlaIV 238 bp.