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. 2012 Oct 17;103(8):1790–1801. doi: 10.1016/j.bpj.2012.09.009

Figure 2.

Figure 2

(A) BZP and CBC structures. The atom numbering used in this work is shown. (B) Comparison of BZP and CBC QM- and MM-optimized structures and dipoles after parameterization. QM-optimized structure is in orange. Atoms in MM-optimized structure are CPK-colored: green carbons, red oxygens, blue nitrogens, white hydrogens, yellow sulfurs. Arrows show dipole orientation, in orange and green for QM and MM, respectively.