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. 2012 Oct 19;7(10):e47235. doi: 10.1371/journal.pone.0047235

Table 1. Calculated Kds and derived ΔG° (Gibbs free energy of binding) for the interactions between eIF4E and the hybrid eIF4G1/PHAGESOL peptides.

Peptide Sequence Thermal Shift (Tm, °C) Estimated Kd derived from the Tm (nM) SPR derived Kd (nM) (ΔG°, cal mol−1)
Keq Kkin Keq derived Kkin derived
eIF4G1-WT 1KKRYDREFLLGF12 7.03±0.1 460 580.2±16.7 523.9±61.6 −8500±20 −8550±70
PHAGESOL 1KKRYSRDQLVAL12 9.83±0.1 77 76.7±3.4 77.1±9.0 −9700±20 −9700±70
eIF4G1-D5S 1KKRYSREFLLGF12 8.97±0.07 100 103.0±2.3 99.9±6.2 −9520±10 −9540±40
eIF4G1-G11A 1KKRYDREFLLAF12 8.13±0.12 200 308.7±11.6 282.0±17.6 −8870±20 −8930±40
eIF4G1-L10V 1KKRYDREFLVGF12 3.9±0.03 4400 4537.0±621.7 2684.7±444.5 −7280±90 −7590±110
eIF4G1-F12L 1KKRYDREFLLGL12 6.87±0.12 520 761.4±63.8 718.1±98.0 −8340±50 −8370±90
eIF4G1-F8Q 1KKRYDREQLLGF12 5. 00±0.03 2000 1633.3±75.1 1777.0±406.1 −7890±30 −7840±150
eIF4G1-E7D 1KKRYDRDFLLGF12 6.87±0.18 520 784.4±21.5 758.8±70.7 −8320±20 −8340±60

The table shows the peptide sequences used to study the relevance of individual amino acid changes observed in the phage derived sequence. The peptides were characterized using a fluorescence based thermal denaturation method and by using SPR with eIF4E amine coupled to the chip surface. Kds were also derived from the respective thermal shift and SPR data. Kds were derived from the equilibrium responses (Keq) and from the association and dissociation phases (Kkin) of the SPR data. The Gibbs free energy of binding (ΔG°) was calculated with the equation ΔG = −RT ln Ka using both dissociation constant values determined.