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. Author manuscript; available in PMC: 2013 Dec 5.
Published in final edited form as: J Comput Chem. 2012 Jul 23;33(31):2451–2468. doi: 10.1002/jcc.23067

Table 4.

MM and MP2/6-31G(d) level equilibrium geometry of OBTZ

Coordinate QM MM Difference
Bond length (Å)

S1-N2 1.683 1.636 −0.046
S1-O11 1.461 1.437 −0.024
S1-O12 1.461 1.437 −0.025
S1-C10 1.775 1.759 −0.016
N2-H2 1.023 1.016 −0.008
N2-C3 1.457 1.457 0.000
C3-H31 1.098 1.116 0.018
C3-H32 1.093 1.118 0.025
C3-N4 1.457 1.474 0.016
N4-H4 1.017 1.017 0.001
N4-C5 1.400 1.420 0.020
C5-C6 1.405 1.401 −0.004
C5-C10 1.410 1.416 0.006
C6-H6 1.089 1.080 −0.009
C6-C7 1.390 1.402 0.012
C7-H7 1.087 1.081 −0.006
C7-C8 1.399 1.400 0.001
C8-H8 1.086 1.082 −0.005
C8-C9 1.391 1.400 0.009
C9-H9 1.088 1.082 −0.006
C9-C10 1.398 1.408 0.010

Dihedrals (°)

C10-S1-N2-C3 47.4 50.7 3.3
S1-N2-C3-N4 −70.1 −73.4 −3.4
N2-C3-N4-C5 56.9 55.7 −1.1
C3-N4-C5-C10 −24.3 −22.8 1.4
N4-C5-C10-S1 6.6 4.8 −1.8
C5-C10-S1-N2 −17.3 −17.0 0.3
C10-C5-C6-C7 1.3 0.8 −0.5
C5-C6-C7-C8 −1.5 −0.2 1.3
C6-C7-C8-C9 0.9 −0.1 −1.0
C7-C8-C9-C10 −0.1 −0.3 −0.2
C8-C9-C10-C5 −0.1 0.9 1.0

Improper Dihedrals (°)

N2-S1-C3-H2 27.6 30.8 3.3
N4-C3-C5-H4 −2.8 −23.6 0.8

Angles (°)

N2-S1-O11 107.0 111.3 4.3
N2-S1-O12 107.0 109.9 2.9
N2-S1-C10 101.4 100.7 −0.7
O11-S1-O12 121.8 123.7 1.9
O11-S1-C10 108.5 103.7 −4.8
O12-S1-C10 109.2 104.5 −4.7
S1-N2-H2 109.2 107.6 −1.7
S1-N2-C3 111.5 113.3 1.8
H2-N2-C3 112.3 108.1 −4.2
N2-C3-H31 106.6 111.6 5.0
N2-C3-H32 108.9 109.3 0.4
N2-C3-N4 110.3 108.0 −2.3
H31-C3-H32 108.8 106.9 −1.9
H31-C3-N4 113.5 111.3 −2.2
H32-C3-N4 108.6 109.7 1.1
C3-N4-H4 113.9 111.9 2.0
C3-N4-C5 117.7 116.0 −1.7
H4-N4-C5 113.3 115.1 1.8
N4-C5-C6 120.1 117.6 −2.5
N4-C5-C10 122.0 122.8 0.8
C6-C5-C10 117.7 119.6 1.9
C5-C6-H6 119.0 120.2 1.2
C5-C6-C7 121.0 120.4 −0.5
H6-C6-C7 120.1 119.4 −0.7
C6-C7-H7 119.2 120.1 0.9
C6-C7-C8 120.6 120.0 −0.6
H7-C7-C8 120.1 119.9 −0.2
C7-C8-H8 120.5 120.1 −0.4
C7-C8-C9 119.3 120.1 0.8
H8-C8-C9 120.2 119.8 −0.3
C8-C9-H9 120.8 120.0 −0.8
C8-C9-C10 120.1 120.3 0.2
H9-C9-C10 119.1 119.7 0.6
S1-C10-C5 120.8 120.4 −0.4
S1-C10-C9 118.0 120.0 2.0
C5-C10-C9 121.2 119.5 −1.7