Table 2.
Candidate genes for immune function, sex differentiation and temperature-response found in our dataset
| Gene | Transcript ID | Transcript length | Match length | Match identity | Match accession |
|---|---|---|---|---|---|
|
Immune genes | |||||
| MHC class I |
29_Locus_17662 |
136 |
136 |
96% |
DQ145788 |
| |
29_Locus_8295 |
526 |
444 |
91% |
ABA42599 |
| |
21_Locus_8663 |
1455 |
717 |
90% |
ABA42599 |
| |
25_Locus_8701 |
642 |
567 |
88% |
ABA42600 |
| |
33_Locus_20320 |
141 |
138 |
86% |
ABA42600 |
| |
25_Locus_21578 |
159 |
105 |
62% |
ABA42599 |
| |
21_Locus_10540 |
222 |
216 |
50% |
ABB92561 |
| MHC class II β chain |
21_Locus_1538 |
921 |
420 |
99% |
DQ124231 |
| |
29_Locus_1474 |
231 |
231 |
94% |
DQ124232 |
| MHC class II α chain |
21_Locus_7902 |
232 |
222 |
74% |
AF256650 |
| |
29_Locus_2120 |
133 |
111 |
92% |
AF256650 |
| MHC class II DM α chain |
21_Locus_1203 |
963 |
648 |
43% |
AEC52935 |
| |
21_Locus_6166 |
155 |
144 |
60% |
ACY01474 |
| Toll-like receptor 2 |
21_Locus_29589 |
125 |
123 |
98% |
ABU95017 |
|
Putative sex-differentiation genes | |||||
| Sox8 |
25_Locus_11477 |
766 |
222 |
97% |
AAO39011 |
| |
25_Locus_1895 |
162 |
162 |
93% |
ABB02374 |
| |
21_Locus_14808 |
309 |
252 |
79% |
AAO49746 |
| Sox 9 |
21_Locus_21814 |
173 |
173 |
100% |
AY168558 |
| |
21_Locus_18139 |
167 |
165 |
98% |
ACU12331 |
| |
21_Locus_24105 |
142 |
67 |
100% |
AY168558 |
| Dax1 |
21_Locus_20366 |
134 |
117 |
92% |
ABQ88373 |
|
Temperature-responsive genes | |||||
| CIRBP |
37_Locus_775 |
500 |
252 |
82% |
XP_003224509 |
| HSP27 |
21_Locus_6322 |
1028 |
543 |
82% |
XP_002190077 |
| |
33_Locus_379 |
827 |
606 |
75% |
XP_002194703 |
| HSP40 (DnaJ) |
21_Locus_336 |
1887 |
1233 |
97% |
NP_001005841 |
| |
21_Locus_2214 |
2001 |
1014 |
83% |
XP_003217107 |
| HSP47 |
25_Locus_2437 |
1689 |
1212 |
90% |
BAF94140 |
| HSP70 |
21_Locus_6649 |
1124 |
1113 |
96.5% |
AEO13403 |
| |
25_Locus_13016 |
548 |
429 |
92% |
EAY98319 |
| |
21_Locus_13133 |
369 |
369 |
90% |
ADD69959 |
| |
21_Locus_4641 |
3563 |
2406 |
90% |
XP_003210546 |
| |
25_Locus_21367 |
271 |
270 |
89% |
XP_002193237 |
| HSP70BP |
25_Locus_4659 |
1484 |
693 |
81% |
NP_001025928 |
| |
25_Locus_5331 |
1431 |
696 |
84% |
XP_003226240 |
| HSP75 |
21_Locus_7217 |
2174 |
1566 |
90% |
BAF94145 |
| HSP90 |
33_Locus_89 |
2694 |
1230 + 372 |
98% |
AF275719 |
| |
21_Locus_16233 |
979 |
975 |
90% |
BAD95027 |
| 21_Locus_31051 | 139 | 138 | 96% | AAD11550 | |
The accession number for the top BLAST hit is given. Not all matches for heat-shock proteins are shown. CIRBP = Cold-inducible RNA binding protein.