Table 1.
Data collection and refinement statistics
Dataset name | Crystal form A | Crystal form B Ir-derivative* | Crystal form B native | Crystal form C |
Data collection† | ||||
Beamline | X29 | X29 | NE-CAT ID-C | NE-CAT ID-C |
Wavelength, Å | 1.07500 | 1.09520 | 0.97949 | 0.97950 |
Space group | P212121 | P6522 | P6522 | P65 |
Unit cell parameters, Å | a = 55.80 | a = 178.64 | a = 178.50 | a = 175.29 |
b = 100.23 | ||||
c = 277.59 | c = 86.47 | c = 86.64 | c = 86.46 | |
Resolution, Å | 100–3.0 (3.19–3.0) | 50–2.6 (2.75–2.6) | 50–3.15 (3.35–3.15) | 50–2.5 (2.65–2.5) |
Unique reflections | 31,980 (5,030) | 47,089 (7,080) | 14,356 (2,246) | 52,159 (8,369) |
Completeness, % | 99.7 (99.0) | 98.7 (91.8) | 99.0 (98.6) | 99.1 (98.8) |
Multiplicity | 6.8 (6.1) | 10.6 (7.6) | 4.1 (4.1) | 3.7 (3.8) |
<I/σI> | 13.3 (2.4) | 19.0 (2.2) | 12.1 (2.8) | 10.1 (1.5) |
RmergeI, %‡ | 13.2 (81.7) | 10.5 (89.8) | 10.8 (49.5) | 11.3 (88.2) |
RmeasI, %‡ | 14.3 (89.2) | 11 (96.2) | 12.4 (56.8) | 13.2 (103) |
RpimI, %§ | 5.5 (34.8) | 2.5 (24.3) | 6.0 (27.4) | 6.8 (52.9) |
Wilson B-factor, Å2 | 54.9 | 55.7 | 54.8 | 49.7 |
Refinement | ||||
Resolution, Å | 69.4–3.0 | 48.4–2.6 | 48.4–3.15 | 47.8–2.5 |
No. reflections | 30,384 | 23,925 | 13,635 | 49,415 |
Rwork/Rfree, %¶ | 22.4/26.1 | 18.5/22.9 | 21.5/24.7 | 19.3/21.9 |
No. atoms | ||||
Protein | 8,338 | 4,159 | 4,213 | 8,286 |
Water | — | 165 | — | 115 |
Metal/ion | 2 Fe | 1 Fe, 1 Ir | 1 Fe, 1PO4 | 2 Fe |
B-factors, Å2 | ||||
Protein | 75.6 | 49.9 | 63.9 | 45.7 |
Water | — | 47.1 | — | 36.8 |
Metal/ion | 60.2 (Fe) | 27.5 (Fe), 68.8 (Ir) | 50.3 (Fe), 68.8 (PO4) | 35.4 (Fe) |
RMS deviations | ||||
Bond lengths, Å | 0.006 | 0.01 | 0.005 | 0.006 |
Bond angles, ° | 1.09 | 1.35 | 1.01 | 1.09 |
Ramachandran plot║ | ||||
Favored/outliers, % | 96.5/0 | 95.9/0.39 | 94.2/0 | 98/0 |
PDB ID code | 4F2Z | 4F3A | 4F30 | 4F3D |
*Bijvoet pairs treated separately.
†Values in parentheses show the highest-resolution shell of data.
‡As defined in XDS.
§As defined in ref. 66.
¶As defined in REFMAC.
║As defined in MolProbity.