Skip to main content
. 2012 Oct 23;7(10):e47888. doi: 10.1371/journal.pone.0047888

Table 1. Details of PCR primers used in this study.

Primer name Sequence 5′-3′ Target
Tvech1-Fw Cagcacagaagtggcaagcttgaa Tvech1 gene
Tvech1-Rv acttggtacacacacgaattcacc Tvech1 gene
Tvech1-Rv2 tccgttgtaagtctggccaatacc Tvech1 gene
Tvech2-Fw ccatctcaagtaaacatgtcggga Tvech2 gene
Tvech2-Rv gggtgcaaacaacaagtaagcctc Tvech2 gene
Tvech2-Rv2 ttgtgggttatagcagtagctgga Tvech2 gene
Tvech3-Fw gaccagaacctactttgaaggctt Tvech3 gene
Tvech3-Rv gcctcgcagaaccatacaagacaa Tvech3 gene
Tvech3-Rv2 ttgcccagatacagtatcccagct Tvech3 gene
Tvnag1-Fw cgtagtagtgctattgccatcgct Tvnag1 gene
Tvnag1-Fw2 gatactacccagacgttcaagccg Tvnag1 gene
Tvnag1-Rv tcccggcttctcttaatccatacc Tvnag1 gene
Tvnag1-Rv2 acggccgcagtccaagtactataa Tvnag1 gene
Tvnag2-Fw Tcgtgtggcctgaccttgtcaact Tvnag2 gene
Tvnag2-Fw2 tcttcttcaagcatagctcaggca Tvnag2 gene
Tvnag2-Rv taccacactgcatactttgttccg Tvnag2 gene
Tvnag2-Rv2 ataaccttgaatccagcctccgcg Tvnag2 gene
HEX1_Fw ccggttgctgccgaaaccttcaat Tvnag2 LF
HEX1.M13F_Rev gtcgtgactgggaaaaccctggcggttgccggttgaggagtgtttcgg Tvnag2 LF
HEX2.M13R_Fw tcctgtgtgaaattgttatccgctccgattacgcagctgtggtgtagt Tvnag2 RF
HEX2_Rev ggccgaaatgatgaccctttgcgg Tvnag2 RF
Chito2_50.1 gcttcgactgctactgtactccgt Tvnag1 LF
Chito2_m13F gtcgtgactgggaaaaccctggcggctgaaagccaatgcggcaatcgc Tvnag1 LF
Chito2_m13R tcctgtgtgaaattgttatccgctcgctgttcacctaaggggagagtc Tvnag1 RF
Chito2_30.1 aacagcatacactgggaagactcg Tvnag1 RF
HY split ggatgcctccgctcgaagta hph gene
YG split cgttgcaagacctgcctgaa hph gene
IL split tctggttgtattctcaggac ilv gene
LV split cataccaagcatgtgcagtg ilv gene
M13 F cgccagggttttcccagtcacgac binding site of pUC/M13 forward sequencing primer
M13 R agcggataacaatttcacacagga binding site of pUC/M13 reverse sequencing primer
1F.endochi.XhoI cgccaaatctagtctcgagct Tvech2 gene
2R.endochi.HindIII aagcttacccctccccgatgccattat Tvech2 gene
3F.endochi.KpnI ggtacccgccaaatctagtctcgagct Tvech2 gene
4R.endochi.SphI gcatgcacccctccccgatgccattat Tvech2 gene
1F.SpeI.ToxA actagtcatggaggagttctgtacgcgc ToxA promoter
2R.fusion.ToxA agcagctcgagactagatttggcggacctatattcattcaatgtcagc ToxA promoter
3F.fusion.ToxA gctgacattgaatgaatataggtccgccaaatctagtctcgagctgct Tvech2 gene
Hex probe F accagacggtccaagttacctaca Tvnag2 gene
Hex probe R tgtttgccttatactcgtcgcctc Tvnag2 gene
Chito2 probe F cgtgctcttcattgaccaggctgt Tvnag1 gene
Chito2 probe R gctcggagtcgttgacgttgagct Tvnag1 gene
Hyg probe 2F aagcctgaactcaccgcgacgtct hph gene
Hyg probe 3R tgctggggcgtcggtttccactat hph gene
Endochi probe1F tgagcttcctcggcaaatccgtgg Tvech1 gene
Endochi probe1R agcagaatccgtgttgaagggagt Tvech1 gene
Endochi probe2F gggagacggctatcgttcagttgc Tvech2 gene
Endochi probe2R cgaagatgccattctcccacgacc Tvech2 gene
Endochi probe3F gctcctttgcgtcgttttggccgt Tvech3 gene
Endochi probe3R gtgtcgccacggtcagaaggtagt Tvech3 gene

LF – left flank.

RF – right flank.