Table 1. Details of PCR primers used in this study.
Primer name | Sequence 5′-3′ | Target |
Tvech1-Fw | Cagcacagaagtggcaagcttgaa | Tvech1 gene |
Tvech1-Rv | acttggtacacacacgaattcacc | Tvech1 gene |
Tvech1-Rv2 | tccgttgtaagtctggccaatacc | Tvech1 gene |
Tvech2-Fw | ccatctcaagtaaacatgtcggga | Tvech2 gene |
Tvech2-Rv | gggtgcaaacaacaagtaagcctc | Tvech2 gene |
Tvech2-Rv2 | ttgtgggttatagcagtagctgga | Tvech2 gene |
Tvech3-Fw | gaccagaacctactttgaaggctt | Tvech3 gene |
Tvech3-Rv | gcctcgcagaaccatacaagacaa | Tvech3 gene |
Tvech3-Rv2 | ttgcccagatacagtatcccagct | Tvech3 gene |
Tvnag1-Fw | cgtagtagtgctattgccatcgct | Tvnag1 gene |
Tvnag1-Fw2 | gatactacccagacgttcaagccg | Tvnag1 gene |
Tvnag1-Rv | tcccggcttctcttaatccatacc | Tvnag1 gene |
Tvnag1-Rv2 | acggccgcagtccaagtactataa | Tvnag1 gene |
Tvnag2-Fw | Tcgtgtggcctgaccttgtcaact | Tvnag2 gene |
Tvnag2-Fw2 | tcttcttcaagcatagctcaggca | Tvnag2 gene |
Tvnag2-Rv | taccacactgcatactttgttccg | Tvnag2 gene |
Tvnag2-Rv2 | ataaccttgaatccagcctccgcg | Tvnag2 gene |
HEX1_Fw | ccggttgctgccgaaaccttcaat | Tvnag2 LF |
HEX1.M13F_Rev | gtcgtgactgggaaaaccctggcggttgccggttgaggagtgtttcgg | Tvnag2 LF |
HEX2.M13R_Fw | tcctgtgtgaaattgttatccgctccgattacgcagctgtggtgtagt | Tvnag2 RF |
HEX2_Rev | ggccgaaatgatgaccctttgcgg | Tvnag2 RF |
Chito2_50.1 | gcttcgactgctactgtactccgt | Tvnag1 LF |
Chito2_m13F | gtcgtgactgggaaaaccctggcggctgaaagccaatgcggcaatcgc | Tvnag1 LF |
Chito2_m13R | tcctgtgtgaaattgttatccgctcgctgttcacctaaggggagagtc | Tvnag1 RF |
Chito2_30.1 | aacagcatacactgggaagactcg | Tvnag1 RF |
HY split | ggatgcctccgctcgaagta | hph gene |
YG split | cgttgcaagacctgcctgaa | hph gene |
IL split | tctggttgtattctcaggac | ilv gene |
LV split | cataccaagcatgtgcagtg | ilv gene |
M13 F | cgccagggttttcccagtcacgac | binding site of pUC/M13 forward sequencing primer |
M13 R | agcggataacaatttcacacagga | binding site of pUC/M13 reverse sequencing primer |
1F.endochi.XhoI | cgccaaatctagtctcgagct | Tvech2 gene |
2R.endochi.HindIII | aagcttacccctccccgatgccattat | Tvech2 gene |
3F.endochi.KpnI | ggtacccgccaaatctagtctcgagct | Tvech2 gene |
4R.endochi.SphI | gcatgcacccctccccgatgccattat | Tvech2 gene |
1F.SpeI.ToxA | actagtcatggaggagttctgtacgcgc | ToxA promoter |
2R.fusion.ToxA | agcagctcgagactagatttggcggacctatattcattcaatgtcagc | ToxA promoter |
3F.fusion.ToxA | gctgacattgaatgaatataggtccgccaaatctagtctcgagctgct | Tvech2 gene |
Hex probe F | accagacggtccaagttacctaca | Tvnag2 gene |
Hex probe R | tgtttgccttatactcgtcgcctc | Tvnag2 gene |
Chito2 probe F | cgtgctcttcattgaccaggctgt | Tvnag1 gene |
Chito2 probe R | gctcggagtcgttgacgttgagct | Tvnag1 gene |
Hyg probe 2F | aagcctgaactcaccgcgacgtct | hph gene |
Hyg probe 3R | tgctggggcgtcggtttccactat | hph gene |
Endochi probe1F | tgagcttcctcggcaaatccgtgg | Tvech1 gene |
Endochi probe1R | agcagaatccgtgttgaagggagt | Tvech1 gene |
Endochi probe2F | gggagacggctatcgttcagttgc | Tvech2 gene |
Endochi probe2R | cgaagatgccattctcccacgacc | Tvech2 gene |
Endochi probe3F | gctcctttgcgtcgttttggccgt | Tvech3 gene |
Endochi probe3R | gtgtcgccacggtcagaaggtagt | Tvech3 gene |
LF – left flank.
RF – right flank.