Table 4.
Contribution of individual resources to GFam residue coverage for TAIR10 proteome
| InterPro data source | Total domains from InterPro Scan output | Total domains after GFam | Total residues from domains after GFam | Residue coverage |
|---|---|---|---|---|
| BlastProDom | 519 | 139 | 13 468 | 0.0019 |
| FPrintScan | 24 917 | 475 | 8585 | 0.0012 |
| Gene3D | 23 290 | 26 | 2414 | 0.0003 |
| HAMAP | 191 | 59 | 16 304 | 0.0023 |
| HMMPIR | 1700 | 1172 | 503 950 | 0.0726 |
| HMMPANTHER | 33 878 | 472 | 109 076 | 0.0157 |
| HMMPfam | 46 991 | 8933 | 1 467 716 | 0.2114 |
| HMMSMART | 20 682 | 1962 | 164 732 | 0.0237 |
| HMMTIGR | 8660 | 1610 | 459 488 | 0.0662 |
| PatternScan | 9662 | 56 | 867 | 0.0001 |
| ProfileScan | 24 147 | 4630 | 328 655 | 0.0473 |
| SUPERFAMILY | 29 568 | 16 394 | 3 610 190 | 0.5201 |
| Novel | NA | 1546 | 270 894 | 0.0390 |
| Total | 224 205 | 37 474 | 6 956 339 |
The number of domains from InterProScan output for each of the 12 resources, the number of domains that were incorporated into the final GFam assignment and their residue coverage.