Table 5.
GFam sequence and residue coverage for model genomes
| Species | Sequence coverage |
Residue coverage |
||||
|---|---|---|---|---|---|---|
| A | B | C | A | B | C | |
| Mus musculus | 0.6790 | 0.6367 | 0.5915 (HMMPanther) | 0.6497 | 0.6233 | 0.5861 (HMMPanther) |
| Danio rerio | 0.8904 | 0.8767 | 0.8440 (HMMPanther) | 0.8229 | 0.8053 | 0.7672 (HMMPanther) |
| Neurospora crassa | 0.6979 | 0.6975 | 0.6310 (HMMPfam) | 0.5977 | 0.5974 | 0.5023 (HMMPanther) |
| Caenorhabditis elegans | 0.6831 | 0.6742 | 0.5884 (HMMPfam) | 0.6638 | 0.6574 | 0.6050 (HMMPanther) |
| Drosophila melanogaster | 0.7235 | 0.6955 | 0.6437 (HMMPanther) | 0.6739 | 0.6193 | 0.5851 (HMMPanther) |
| Dictyostelium discoideum | 0.7020 | 0.6698 | 0.5400 (HMMPfam) | 0.6673 | 0.6370 | 0.5674 (HMMPanther) |
| Gallus gallus | 0.7737 | 0.7596 | 0.7276 (HMMPanther) | 0.8089 | 0.8012 | 0.7687 (HMMPanther) |
| Daphnia pulex | 0.5109 | 0.5109 | 0.4230 (HMMPfam) | 0.5041 | 0.4873 | 0.4165 (HMMPanther) |
Sequence and residue coverage for several model genomes using GFam and the best single-constituent InterPro resource. A, GFam_NoFilter; B, GFam_NoFilter_No-novel and C, best single-constituent resource within InterPro.