Table 1. Characteristics of Sequence Clusters Containing Putative Satellite Repeats.
| Proportion (%) |
Ratio (ChIP-seq/WGS) | Probe (GenBank Acc. No.)b | |||||
|---|---|---|---|---|---|---|---|
| Clustera | WGSc | ChIP-seqd | Repeat | Monomer (bp) | Chromosomal Locations | ||
| 49 | 0.100 | 2.780 | 27.80 | St49 | 2754 | 1335 (JQ731639) | Centromere 5 |
| 57 | 0.080 | 1.587 | 19.74 | St57 | 1924 | 1338 (JQ731642) | Centromere 7 |
| 24 | 0.268 | 3.124 | 11.68 | St24 | 979 | 1336 (JQ731640) | Centromere 1 |
| 3 | 2.272 | 13.730 | 6.04 | ||||
| St3-58 | 2957 | 1331 (JQ731637) | Centromere 2 | ||||
| St3-238 | 3814 | 1333 (JQ731638) | Centromere 8 | ||||
| St3-294 | (5390)e | 1340 (JQ731643) | Centromeres 3/9 | ||||
| 18 | 0.310 | 1.459 | 4.70 | St18 | 1180 | 1337 (JQ731641) | Centromere 9 |
a
Clusters generated by analysis of whole-genome 454 sequencing data.
b
Clones of genomic fragments obtained by PCR with primers based on predicted consensus sequences.
c
Whole-genome sequencing (454 reads).
d
CENH3 ChIP-seq data (Illumina reads).
e
Estimated from predicted sequence but not verified by PCR (only a partial fragment cloned).