Table 1. General and Specific Reads from the Different Tomato Small RNA Libraries.
| Small RNA | Wild Type | ago7 | dcl4 | rdr6 |
|---|---|---|---|---|
| Number of readsa | 1,801,588 | 1,793,203 | 2,232,298 | 1,807,785 |
| Number of sequencesb | 113,903 | 122,640 | 114,658 | 113,991 |
| Novel sequencesc | – | 21,365 | 27,138 | 22,049 |
| Unique sequencesd | 5,256 | 3,526 | 7,650 | 3,353 |
| miR159 | 42,230 | 23,593 | 38,646 | 26,364 |
| miR164 | 730 | 2,890 | 2,768 | 2,770 |
| miR166 | 17,675 | 27,268 | 16,482 | 10,360 |
| miR390 | 182 | 155 | 251 | 205 |
| ta-siARF | 94 | 0 | 15 | 0 |
a
Number of reads after adaptor removal and filtering out rRNA and tRNAs.
b
Sequences are counted only when present in at least five independent reads.
c
Sequences not present in the wild-type library.
d
Sequences present only in this library.
–, no novel sequences.