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. 2012 Oct 24;7(10):e47695. doi: 10.1371/journal.pone.0047695

Table 1. Differentially regulated genes in S. aureus SH1000 biofilms, grown for 48 hrs and 144 hrs, compared with planktonic cultures. ORFs encoding hypothetical proteins not shown.

ORF Gene Function Fold change
48 hr Biofilms/Planktonic
SAOUHSC_00502 ctsR Transcriptional regulator CtsR 2.20 up
SAOUHSC_00526 Putative ribosomal protein L7Ae-like 2.30 up
SAOUHSC_00894 rocD2 Ornithine aminotransferase 2 2.61 up
SAOUHSC_00895 Glutamate dehydrogenase, NAD-specific, putative 2.36 up
SAOUHSC_01002 qoxA Probable quinol oxidase subunit 2 2.00 up
SAOUHSC_01042 Dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2, putative 2.17 up
SAOUHSC_01103 Succinate dehydrogenase cytochrome b-558 subunit, putative 2.16 up
SAOUHSC_01216 sucC Succinyl-CoA synthetase subunit beta 2.44 up
SAOUHSC_01389 pstS Phosphate-binding protein PstS 2.24 up
SAOUHSC_01407 Putative XpaC protein 2.04 up
SAOUHSC_01408 TelA-like protein 2.32 up
SAOUHSC_01418 odhA 2-oxoglutarate dehydrogenase E1 component 2.02 up
SAOUHSC_01462 gpsB Cell cycle protein gpsB 2.37 up
SAOUHSC_01477 Putative Zn dependent protease 2.38 up
SAOUHSC_01653 sodA Superoxide dismutase [Mn] 1 2.77 up
SAOUHSC_01683 dnaK Chaperone protein DnaK 2.47 up
SAOUHSC_01684 grpE Protein GrpE 3.15 up
SAOUHSC_01685 hrcA Heat-inducible transcription repressor HrcA 2.84 up
SAOUHSC_01720 Putative Holliday junction resolvase 2.00 up
SAOUHSC_01801 icd Isocitrate dehydrogenase 2.26 up
SAOUHSC_01880 Transposase domain protein 3.32 down
SAOUHSC_02261 agrB Accessory gene regulator protein B 2.76 up
SAOUHSC_02262 agrD Accessory gene regulator protein D 3.56 up
SAOUHSC_02264 agrC Accessory gene regulator protein C 2.62 up
SAOUHSC_02350 atpB ATP synthase subunit A 2.03 up
SAOUHSC_02488 rpmJ 50S ribosomal protein L36 2.23 up
144 hr Biofilms/Planktonic
SAOUHSC_01683 dnaK Chaperone protein DnaK 2.17 up
SAOUHSC_01684 grpE Protein GrpE 2.47 up
SAOUHSC_01685 hrcA Heat-inducible transcription repressor HrcA 2.43 up
SAOUHSC_02260 hld Delta hemolysin 3.55 down
SAOUHSC_02466 Truncated MHC class II analog protein 2.34 down