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. 2012 Oct 4;3(10):e398. doi: 10.1038/cddis.2012.134

Table 1. Characterization of mesenchymal subtype-like U87-2M1 glioma cells by DNA microarray analysis.

Gene ontology term Enrichment score Count % P-value FDR
(a) Enriched gene clusters in U87-2M1 glioma cellsa
 GO:0007155          
  Cell adhesion 7.16 72 7.64 5.27E−08 9.52E−05
 GO:0048731          
  System development 5.33 182 19.3 8.15E−09 1.47E−05
 GO:0001944          
  Vasculature development 5.12 37 3.92 7.75E−08 1.40E−04
 GO:0043062          
  Extracellular structure organization 3.89 30 3.18 1.11E−08 2.01E−05
 GO:0042060          
  Wound healing 3.46 27 2.86 9.07E−06 1.64E−02
 GO:0048513          
  Organ development 3.32 132 14.0 8.21E−06 1.48E−02
           
(b) Enriched gene clusters in U87-2M1 glioma cells after miR-10b silencingb
 GO:0019222          
  Regulation of metabolic process 6.93 401 24.4 1.36E−11 2.53E−08
 GO:0042127          
  Regulation of cell proliferation 5.26 111 6.74 2.99E−08 5.53E−05
 GO:0048522          
  Positive regulation of cellular process 5.05 221 13.4 6.95E−09 1.29E−05
 GO:0032502          
  Developmental process 4.52 333 20.2 3.42E−07 6.34E−04
 GO:0000280          
  Nuclear division 3.86 39 2.37 1.19E−05 2.21E−02
 GO:0051270          
  Regulation of cell motion 3.67 35 2.13 2.22E−05 4.10E−02
 GO:0001944          
  Vasculature development 3.61 43 2.61 9.54E−06 1.77E−02
 GO:0043067          
  Regulation of programmed cell death 3.56 105 6.38 4.85E−06 8.99E−03

Abbreviation: FDR, false discovery rate

a

Genes that were differentially regulated by more than twofolds between U87-2M1 and U87 cells were screened using DAVID version 6.7, for enriched biological themes. Six most enriched gene ontology terms are listed

b

Genes that were differentially regulated by more than 1.5-fold after miR-10b silencing in U87-2M1 cells were screened with DAVID version 6.7, for identification of biological themes. Eight most enriched gene ontology terms are listed