Table 1. Characterization of mesenchymal subtype-like U87-2M1 glioma cells by DNA microarray analysis.
Gene ontology term | Enrichment score | Count | % | P-value | FDR |
---|---|---|---|---|---|
(a) Enriched gene clusters in U87-2M1 glioma cellsa | |||||
GO:0007155 | |||||
Cell adhesion | 7.16 | 72 | 7.64 | 5.27E−08 | 9.52E−05 |
GO:0048731 | |||||
System development | 5.33 | 182 | 19.3 | 8.15E−09 | 1.47E−05 |
GO:0001944 | |||||
Vasculature development | 5.12 | 37 | 3.92 | 7.75E−08 | 1.40E−04 |
GO:0043062 | |||||
Extracellular structure organization | 3.89 | 30 | 3.18 | 1.11E−08 | 2.01E−05 |
GO:0042060 | |||||
Wound healing | 3.46 | 27 | 2.86 | 9.07E−06 | 1.64E−02 |
GO:0048513 | |||||
Organ development | 3.32 | 132 | 14.0 | 8.21E−06 | 1.48E−02 |
(b) Enriched gene clusters in U87-2M1 glioma cells after miR-10b silencingb | |||||
GO:0019222 | |||||
Regulation of metabolic process | 6.93 | 401 | 24.4 | 1.36E−11 | 2.53E−08 |
GO:0042127 | |||||
Regulation of cell proliferation | 5.26 | 111 | 6.74 | 2.99E−08 | 5.53E−05 |
GO:0048522 | |||||
Positive regulation of cellular process | 5.05 | 221 | 13.4 | 6.95E−09 | 1.29E−05 |
GO:0032502 | |||||
Developmental process | 4.52 | 333 | 20.2 | 3.42E−07 | 6.34E−04 |
GO:0000280 | |||||
Nuclear division | 3.86 | 39 | 2.37 | 1.19E−05 | 2.21E−02 |
GO:0051270 | |||||
Regulation of cell motion | 3.67 | 35 | 2.13 | 2.22E−05 | 4.10E−02 |
GO:0001944 | |||||
Vasculature development | 3.61 | 43 | 2.61 | 9.54E−06 | 1.77E−02 |
GO:0043067 | |||||
Regulation of programmed cell death | 3.56 | 105 | 6.38 | 4.85E−06 | 8.99E−03 |
Abbreviation: FDR, false discovery rate
Genes that were differentially regulated by more than twofolds between U87-2M1 and U87 cells were screened using DAVID version 6.7, for enriched biological themes. Six most enriched gene ontology terms are listed
Genes that were differentially regulated by more than 1.5-fold after miR-10b silencing in U87-2M1 cells were screened with DAVID version 6.7, for identification of biological themes. Eight most enriched gene ontology terms are listed