Table 2.

Analysis results of module gene sets and KEGG pathways by ALIGATOR (P_BH <0.2)

Gene set	P	PBH$
VEGAS-all module genes	1.0 × 10-4	0.007
VEGAS-top module genes	1.0 × 10-4	0.007
minP module genes	1.0 × 10-4	0.007
Asthma (hsa05310)	8.0 × 10-4	0.040
Tryptophan metabolism (hsa00380)	1.7 × 10-3	0.068
Gap junction (hsa04540)	2.3 × 10-3	0.076
Cytokine-cytokine receptor interaction (hsa04060)	2.9 × 10-3	0.082
Intestinal immune network for IgA production (hsa04672)	5.5 × 10-3	0.137

^$P values were adjusted by Benjamini & Hochberg (BH) method [20].