Table 3.

Summary of module genes having positive association results in previous studies

Gene	Module gene set$	# SNPs	Chr.	Start (bp)	Stop (bp)	PVEGAS-all	PVEGAS-top	PminP
NOS1AP	a, m	125	1	160306204	160606437	0.005	0.007	1.07 × 10-4
PTGS2	t, m	14	1	184907591	184916179	0.013	8.5 × 10-4	1.07 × 10-5
TSNAX	t	11	1	229731021	229768892	0.476	0.306	0.113
DISC1	m	106	1	229829183	230243641	0.349	0.100	0.004
FLNB	a	47	3	57969166	58133017	0.030	0.034	0.007
GSK3B	t	40	3	121028235	121295203	0.141	0.073	0.011
PDE4D	m	193	5	58300622	59225378	0.277	0.018	6.16 × 10-5
IL4	a	12	5	132037271	132046267	0.069	0.019	0.007
DTNBP1	a	52	6	15631017	15771250	0.020	0.022	0.008
RPP21	t, m	48	6	30420915	30422611	0.014	0.001	1.04 × 10-4
LTA	m	43	6	31648071	31650077	0.450	0.075	0.003
TNF	m	43	6	31651328	31654091	0.598	0.184	0.003
ESR1	a, t, m	86	6	152053323	152466101	0.091	0.027	0.004
TBP	t	13	6	170705395	170723872	0.031	0.019	0.010
EGFR	t, m	72	7	55054218	55242525	0.556	0.294	0.026
YWHAZ	a, t, m	17	8	102000089	102034745	0.857	0.685	0.268
GRIN1	a, t, m	3	9	139153429	139183029	0.016	0.005	0.004
ATE1	m	59	10	123492614	123677536	0.491	0.155	9.28 × 10-4
IFNG	t, m	26	12	66834816	66839788	0.068	0.007	0.002
NOS1	m	45	12	116135361	116283965	0.643	0.315	0.028
DGKH	t	68	13	41520888	41701888	0.106	0.031	0.002
AKT1	a, t	6	14	104306731	104333125	0.076	0.056	0.026
TP53	t, m	11	17	7512444	7531588	0.540	0.219	0.075
PRKCA	t	129	17	61729387	62237324	0.995	0.857	0.029
MAG	m	13	19	40474877	40496547	0.097	0.037	0.003
DNMT3B	t, m	21	20	30813851	30860823	0.026	0.002	1.75 × 10-4
MYH9	m	37	22	35007271	35113927	0.050	0.017	5.75 × 10-4

^$a: VEGAS-all; t: VEGAS-top; m: minP.