Table 2.
Comparison of expected and observed di-nucleotide frequencies and di-nucleotide PWM
| 1 | 2 | 3 | 4 | 5 | |
|---|---|---|---|---|---|
| AA |
0 |
0 |
0 |
0 |
14 |
| |
0 |
0 |
0 |
0 |
11.75 |
| AT |
0 |
0 |
72 |
0 |
10 |
| |
0 |
0 |
71.04 |
0 |
5.88 |
| AG |
32 |
0 |
5 |
0 |
20 |
| |
30.91 |
0 |
5.64 |
0 |
30.12 |
| AC |
0 |
0 |
0 |
0 |
4 |
| |
0.46 |
0 |
0 |
0 |
2.2 |
| TA |
0 |
0 |
0 |
45 |
9 |
| |
0 |
0 |
0 |
46.28 |
5.47 |
| TT |
0 |
0 |
1 |
24 |
0 |
| |
0 |
0 |
1.08 |
21.53 |
2.73 |
| TG |
25 |
0 |
0 |
4 |
17 |
| |
25.18 |
0 |
0.09 |
4.31 |
14.01 |
| TC |
0 |
0 |
0 |
1 |
0 |
| |
0.38 |
0 |
0 |
1.08 |
1.03 |
| GA |
0 |
76 |
0 |
3 |
0 |
| |
0 |
75.55 |
0 |
3.67 |
1.09 |
| GT |
0 |
1 |
1 |
2 |
0 |
| |
0 |
1.14 |
1.08 |
1.71 |
0.55 |
| GG |
3 |
1 |
0 |
0 |
3 |
| |
4.58 |
1.14 |
0.09 |
0.34 |
2.8 |
| GC |
1 |
0 |
0 |
0 |
1 |
| |
0.07 |
0 |
0 |
0.09 |
0.21 |
| CA |
0 |
1 |
0 |
0 |
0 |
| |
0 |
1.13 |
0 |
0 |
0.27 |
| CT |
0 |
0 |
0 |
0 |
0 |
| |
0 |
0.02 |
0 |
0 |
0.14 |
| CG |
18 |
0 |
0 |
0 |
1 |
| |
17.17 |
0.02 |
0 |
0 |
0.7 |
| CC |
0 |
0 |
0 |
0 |
0 |
| |
0.26 |
0 |
0 |
0 |
0.05 |
| AA |
-4.62 |
-5.66 |
-6.16 |
-5.81 |
-0.16 |
| AT |
-4.14 |
-5.18 |
0.00 |
-5.33 |
-0.02 |
| AG |
0.00 |
-5.91 |
-3.39 |
-6.06 |
-0.05 |
| AC |
-4.41 |
-5.45 |
-5.94 |
-5.60 |
-1.20 |
| TA |
-4.02 |
-5.06 |
-5.55 |
0.00 |
0.00 |
| TT |
-4.58 |
-5.62 |
-4.72 |
-1.20 |
-4.17 |
| TG |
-0.09 |
-5.75 |
-6.24 |
-3.11 |
-0.06 |
| TC |
-4.69 |
-5.73 |
-6.22 |
-4.48 |
-4.27 |
| GA |
-4.69 |
0.00 |
-6.22 |
-3.38 |
-4.27 |
| GT |
-4.44 |
-4.08 |
-4.57 |
-3.54 |
-4.02 |
| GG |
-2.69 |
-4.83 |
-6.72 |
-6.38 |
-2.27 |
| GC |
-3.70 |
-6.14 |
-6.63 |
-6.29 |
-3.29 |
| CA |
-4.70 |
-4.34 |
-6.24 |
-5.89 |
-4.28 |
| CT |
-4.84 |
-5.89 |
-6.38 |
-6.04 |
-4.43 |
| CG |
-0.47 |
-5.80 |
-6.29 |
-5.95 |
-2.95 |
| CC |
-5.17 |
-6.22 |
-6.71 |
-6.37 |
-4.76 |
| AG/TG/CG | GA | AT | TA | TA/AT/AG/TG/AA |
Optimized di-nucleotide frequency table and PWM. The observed frequencies are provided in the first line for each di-nucleotide, with the following line representing expected di-nucleotide frequencies (calculated from the mono-nucleotide frequencies). The presented are the frequencies of the di-nucleotides from the motifs selected from the interval -7 to 0.