Table 3.
Significant SNPs for T-cell subpopulations
|
Trait |
No. SNPs |
SNP Name |
SSC. |
Position |
Significance levelb |
Nearest gene |
Distance (bp) |
|---|---|---|---|---|---|---|---|
| (bp)a | |||||||
| CD4-CD8- T% |
3 |
ALGA0006170 |
SSC1 |
147676962 |
A |
SELS |
101263 |
| |
|
ALGA0027442 |
SSC4 |
106255554 |
A |
LOC100515138 |
15207 |
| |
|
MARC0035862 |
SSC17 |
26683704 |
A |
FLRT3 |
999166 |
| CD4+CD8+ T% |
15 |
ASGA0000475 |
SSC1 |
5393161 |
A |
QKI |
197563 |
| |
|
MARC0090836 |
SSC5 |
18263549 |
A |
LOC100523435 |
8399 |
| |
|
H3GA0016197 |
SSC5 |
30846602 |
A |
LOC100514286 |
within |
| |
|
DRGA0005876 |
SSC5 |
52631994 |
A |
LOC100153016 |
7905 |
| |
|
ASGA0093882 |
SSC8 |
27821389 |
A |
LOC100515221 |
68339 |
| |
|
MARC0103793 |
SSC9 |
117134341 |
A |
NCF2 |
within |
| |
|
ALGA0061180 |
SSC11 |
18408471 |
A |
LOC100518860 |
within |
| |
|
ALGA0062506 |
SSC11 |
55628913 |
A |
RNF219 |
152990 |
| |
|
DRGA0012994 |
SSC13 |
116721928 |
A |
LOC100518275 |
Within |
| |
|
ASGA0059251 |
SSC13 |
116794774 |
A |
LOC100518275 |
within |
| |
|
H3GA0037561 |
SSC13 |
117065279 |
A |
LOC100518275 |
within |
| |
|
MARC0024545 |
SSC13 |
117511306 |
A |
LOC100739759 |
within |
| |
|
H3GA0037568 |
SSC13 |
117963270 |
A |
CLDN11 |
within |
| |
|
ALGA0072642 |
SSC13 |
118134975 |
A |
SLC7A14 |
22223 |
| |
|
ASGA0077977 |
SSC17 |
59215829 |
A |
CBLN4 |
within |
| CD4+CD8- T% |
31 |
SIRI0000967 |
SSC1 |
65386385 |
A |
MAP3K7 |
93369 |
| |
|
ALGA0109882 |
SSC1 |
65402776 |
A |
MAP3K7 |
76978 |
| |
|
ALGA0003935 |
SSC1 |
67256904 |
A |
LOC100152346 |
within |
| |
|
MARC0008049 |
SSC6 |
74003688 |
A |
LOC100738715 |
within |
| |
|
ALGA0105115 |
SSC9 |
127202082 |
A |
CD46 |
12474 |
| |
|
MARC0076632 |
SSC9 |
127394064 |
B |
LOC100514786 |
within |
| |
|
ASGA0046812 |
SSC10 |
16205420 |
A |
LOC100513811 |
within |
| |
|
ALGA0057450 |
SSC10 |
16220722 |
A |
LOC100513811 |
within |
| |
|
ALGA0061535 |
SSC11 |
23576083 |
A |
TRNAE-UUC |
42913 |
| |
|
M1GA0015162 |
SSC11 |
61231196 |
A |
LOC100154696 |
within |
| |
|
ASGA0051093 |
SSC11 |
61450492 |
A |
LOC100154696 |
112456 |
| |
|
ALGA0108362 |
SSC12 |
6596691 |
A |
LOC100518214 |
225784 |
| |
|
MARC0009109 |
SSC12 |
6637944 |
A |
SOX9 |
229926 |
| |
|
ALGA0106073 |
SSC12 |
6663787 |
A |
SOX9 |
204083 |
| |
|
ASGA0052986 |
SSC12 |
6791202 |
A |
SOX9 |
76668 |
| |
|
ASGA0052974 |
SSC12 |
6826155 |
A |
SOX9 |
41715 |
| |
|
ALGA0064738 |
SSC12 |
6891741 |
A |
SOX9 |
20500 |
| |
|
H3GA0033370 |
SSC12 |
6976387 |
B |
LOC100518393 |
21514 |
| |
|
ASGA0053002 |
SSC12 |
7105246 |
A |
LOC100519105 |
55408 |
| |
|
ASGA0104370 |
SSC12 |
7185885 |
A |
LOC100519105 |
136047 |
| |
|
ALGA0064767 |
SSC12 |
7400177 |
A |
LOC100519105 |
350339 |
| |
|
ALGA0078815 |
SSC14 |
76804400 |
A |
LOC100521406 |
85124 |
| |
|
H3GA0041012 |
SSC14 |
77946383 |
A |
PSAP |
within |
| |
|
ASGA0065687 |
SSC14 |
107127514 |
A |
HTR7 |
260753 |
| |
|
ALGA0087956 |
SSC15 |
123078022 |
A |
LOC100516232 |
22744 |
| |
|
INRA0055474 |
SSC18 |
21991584 |
A |
LOC100622672 |
28674 |
| |
|
ALGA0097499 |
SSC18 |
22003396 |
A |
LOC100513190 |
3075 |
| |
|
ASGA0079256 |
SSC18 |
22055859 |
A |
LOC100525548 |
1899 |
| |
|
ALGA0098112 |
SSC18 |
38463920 |
A |
BMPER |
113622 |
| |
|
MARC0089391 |
SSC18 |
38488630 |
A |
BMPER |
88912 |
| |
|
MARC0024065 |
SSC18 |
50965324 |
A |
LOC100622432 |
within |
| CD4-CD8+ T% |
3 |
ASGA0022812 |
SSC4 |
126976845 |
A |
LOC100737939 |
107579 |
| |
|
H3GA0041012 |
SSC14 |
77946383 |
A |
PSAP |
within |
| |
|
ALGA0103427 |
SSC15 |
127742340 |
A |
IKZF2 |
within |
| CD4+ T% |
6 |
ASGA0023262 |
SSC4 |
130826499 |
A |
LOC100151966 |
174827 |
| |
|
ALGA0030335 |
SSC5 |
7606208 |
A |
LOC100512654 |
6682 |
| |
|
ALGA0122248 |
SSC16 |
73417692 |
A |
LOC100518939 |
70693 |
| |
|
INRA0055474 |
SSC18 |
21991584 |
A |
LOC100513190 |
within |
| |
|
ASGA0079256 |
SSC18 |
22055859 |
A |
LOC100525548 |
1899 |
| |
|
ASGA0080319 |
SSC18 |
49513089 |
A |
LOC100516656 |
43287 |
| CD8+ T% |
1 |
ALGA0006170 |
SSC1 |
147676962 |
B |
SELS |
101263 |
| CD4+:CD8+ |
5 |
H3GA0041012 |
SSC14 |
77946383 |
A |
PSAP |
within |
| |
|
ALGA0117513 |
SSC15 |
123215784 |
A |
LOC100518938 |
11678 |
| |
|
ALGA0122248 |
SSC16 |
73417692 |
A |
LOC100738933 |
403285 |
| |
|
ALGA0098112 |
SSC18 |
38463920 |
A |
BMPER |
113622 |
| MARC0089391 | SSC18 | 38488630 | A | BMPER | 88912 |
a: Derived from the recent porcine genome sequence assembly (Sscrofa9.2) ( http://www.ncbi.nlm.nih.gov/projects/mapview/map_search.cgi?taxid=9823&build=previous).
b: A means chromosome-wise significance level, B means genome-wise significance level.