Table 4.
Cluster C1–C3 (Figure 8) showing significant over-represented specific motifs in mis-regulated genes of gun4-1 mutants analyzed for overrepresentation of gene ontology (GO) categories.
| Cluster | Domain (C, F, P) | P-value | GO category | Description |
|---|---|---|---|---|
| C1 | F | 0.014 | GO:0016491 | Oxidoreductase activity |
| C2 | P | 0.004 | GO:0009743 | Response to carbohydrate stimulus |
| 0.032 | GO:0010200 | Response to chitin | ||
| C3 | C | 0.037 | GO:0044464 | Cell part |
| F | 0.047 | GO:0005199 | Structural constituent of cell wall | |
| 0.036 | GO:0016762 | Xyloglucan:xyloglucoyl transferase activity | ||
| P | 0.023 | GO:0050832 | Defense response to fungus | |
| 0.006 | GO:0009646 | Response to absence of light | ||
| 0.026 | GO:0010200 | Response to chitin | ||
| 0.005 | GO:0009744 | Response to sucrose stimulus |
The genes forming the respective clusters (Data Sheet 3 in Supplementary Material) were analyzed for over-represented GO categories (P ≤ 0.05). Intermediate GO categories are omitted. C, cellular component; F, molecular function; P, biological process.