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. 2012 Nov;22(11):2262–2269. doi: 10.1101/gr.140665.112

Figure 3.

Figure 3.

Clustering analysis of YY1 binding sites. (A) Histogram indicates the number of regions in each cluster, and the overlaid dendrogram traces the interactive cluster splitting events. (B) ChIP-seq data for YY1, CTBP2, SUZ12, and histone modifications (blue) together with MRE-seq and MeDIP-seq (green) and RNA-seq (orange) data from H1 hESCs were clustered using a bin size of 300 bp across 6-kb windows centered on sites of YY1 ChIP-seq enrichment. (C) Scrollable region browser: Data from individual regions within the currently selected cluster (c2) can be interactively viewed (five regions displayed at one time, r1–r5). (D) A context menu provides a hyperlink to the corresponding region display within the UCSC Genome Browser (view of r1 shown).