Table 2.

Examples of Signal Patterns and Ploidy Annotation for the IDC of Case 1

CEP10	CEP4	COX2	DBC2	MYC	CCND1	CDH1	TP53	HER2	ZNF217	Nuclei count	Assigned ploidy
1	2	2	2	2	2	2	1	2	2	1	2
1	2	2	2	2	2	2	2	2	0	1	2
1	2	2	2	2	2	2	2	2	2	3	2
–	–	–	–	–	–	–	–	–	–	–	–
2	2	2	2	2	2	0	2	2	2	1	2
2	2	2	2	2	2	1	2	2	2	4	2
–	–	–	–	–	–	–	–	–	–	–	–
4	2	3	2	4	2	1	2	2	1	1	2
4	2	3	2	4	2	1	2	2	2	5	2
4	2	3	2	4	3	1	2	2	2	1	2
4	2	3	3	4	1	1	2	1	2	1	2
4	2	3	3	4	2	1	1	2	1	1	2
4	2	3	3	4	2	1	1	2	2	2	2
4	2	3	3	4	2	1	2	2	2	11	2
4	2	3	3	4	2	1	3	4	2	1	2
4	2	3	3	4	2	2	2	2	2	1	2
4	2	3	3	4	2	2	2	3	2	1	2
4	2	3	3	4	3	1	2	2	2	1	2
4	2	3	3	4	3	1	2	4	2	1	2
4	2	3	4	4	2	2	2	2	2	1	2
4	2	3	4	4	2	3	2	2	2	3	2
4	2	4	4	4	2	1	2	3	2	1	2
–	–	–	–	–	–	–	–	–	–	–	–

Frequent signal patterns are shown in bold. Dashes indicate places in the table where rows of the Excel file are omitted.