Table 1.
Sweepoviruses used in this study
| Species-Strain | Accession no | Identification according to databases | Origin | Reference | Acronym suggested in this studyb |
|---|---|---|---|---|---|
| |
HQ393450 |
SPLCV-US[BR:PA:08]a |
Brazil |
This study |
SPLCV-US[BR:PA:08] |
| SPLCV-US |
HQ393451 |
SPLCV-US[BR:SE:PV:08] |
Brazil |
This study |
SPLCV-US[BR:SE:PV:08] |
|
HQ393443 |
SPLCV-US[BR:BA:CA1:08] |
Brazil |
This study |
SPLCV-US[BR:BA:CA1:08] |
|
|
HQ393446 |
SPLCV-US[BR:BA:CA2:08] |
Brazil |
This study |
SPLCV-US[BR:BA:CA2:08] |
|
|
FJ969834 |
SPLCV-RS2[BR:Est1] |
Brazil |
Paprotka et al., 2010 |
SPLCV-US[BR:RS:Est1:07] |
|
|
FJ969837 |
SPLCV-RS2[BR:Ros1] |
Brazil |
Paprotka et al., 2010 |
SPLCV-US[BR:RS:Ros1:07] |
|
|
FJ969835 |
SPLCV-RS2[BR:Mac1] |
Brazil |
Paprotka et al., 2010 |
SPLCV-US[BR:RS:Mac1:07] |
|
|
HQ393471 |
SPLCV-US[BR:SP:AM1:09] |
Brazil |
This study |
SPLCV-US[BR:SP:AM1:09] |
|
|
HQ393472 |
SPLCV-US[BR:SP:AM2:09] |
Brazil |
This study |
SPLCV-US[BR:SP:AM2:09] |
|
|
FJ969836 |
SPLCV-RS2[BR:Poa1] |
Brazil |
Paprotka et al., 2010 |
SPLCV-US[BR:RS:Poa1:07] |
|
|
HQ393475 |
SPLCV-US[BR:SP:AM4:09] |
Brazil |
This study |
SPLCV-US[BR:SP:AM4:09] |
|
|
HQ393474 |
SPLCV-US[BR:SP:AM3:09] |
Brazil |
This study |
SPLCV-US[BR:SP:AM3:09] |
|
|
HM754641 |
SPLCV-[Haenam1] |
South Korea |
GenBank |
SPLCV-US[KR:Hae1:09] |
|
|
HM754637 |
SPLCV-[Yeojoo 507] |
South Korea |
GenBank |
SPLCV-US[KR:Yeo507:09] |
|
|
FJ560719 |
SPLCKrV-[J-508] |
South Korea |
GenBank |
SPLCV-US[KR:Yeo508:08] |
|
|
HM754639 |
SPLCV-[Haenam532] |
South Korea |
GenBank |
SPLCV-US[KR:Hae532:09] |
|
|
HM754638 |
SPLCV-[Haenam 519–3] |
South Korea |
GenBank |
SPLCV-US[KR:Hae519:09] |
|
|
HM754635 |
SPLCV-[Yeojoo 388] |
South Korea |
GenBank |
SPLCV-US[KR:Yeo388:09] |
|
|
HM754636 |
SPLCV-[Nonsan 445–2] |
South Korea |
GenBank |
SPLCV-US[KR:Non445-2:09] |
|
|
HM754634 |
SPLCV-[Chungju 263] |
South Korea |
GenBank |
SPLCV-US[KR:Chu263:09] |
|
|
HM754640 |
SPLCV-[Haenam 618–2] |
South Korea |
GenBank |
SPLCV-US[KR:Hae618:09] |
|
|
AF104036 |
SPLCV-US[US:Lou:94] |
USA |
Lotrakul & Valverde, 1999 |
SPLCV-US[US:Lou:94] |
|
|
HQ393453 |
SPLCV-US[BR:RO:OPO:08] |
Brazil |
This study |
SPLCV-US[BR:RO:OPO:08] |
|
|
FJ176701 |
SPLCV-[Eastern China] |
China |
GenBank |
SPLCV-US[CN:Jia:08] |
|
|
AB433788 |
SPLCV-[Japan:Kyoto:1998] |
Japan |
GenBank |
SPLCV-US[JR:Kyo:98] |
|
|
HQ333141 |
SPLCV-[US:MS:WS1-4] |
USA |
Zhang & Ling, 2011 |
SPLCV-US[US:MS:WS1-4:07] |
|
|
HQ333142 |
SPLCV-[US:MS:WS3-8] |
USA |
Zhang & Ling, 2011 |
SPLCV-US[US:MS:WS3-8:07] |
|
|
HQ333140 |
SPLCV-[US:MS:4B-14] |
USA |
Zhang & Ling, 2011 |
SPLCV-US[US:MS:4b-14:07] |
|
|
HQ333139 |
SPLCV-[US:MS:1B-1A] |
USA |
Zhang & Ling, 2011 |
SPLCV-US[US:MS:1b-1a:07] |
|
| SPLCV-CN |
EU267799 |
SPLCV-[RL7] |
China |
GenBank |
SPLCV-CN[CN:Yn:RL7:07] |
|
FN806776 |
SPLCV-[Y338] |
China |
GenBank |
SPLCV-CN[CN:Yn338:09] |
|
|
EU253456 |
SPLCV-[RL31] |
China |
GenBank |
SPLCV-CN[CN:Yn:RL31:07] |
|
| SPLCV-SP |
HQ393473 |
SPLCV-SP[BR:AlvM:09] |
Brazil |
Albuquerque et al., 2011 |
SPLCV-SP[BR:SP:AlvM:09] |
|
HQ393476 |
SPLCV-SP[BR:SP:PP:09] |
Brazil |
This study |
SPLCV-SP[BR:SP:PP:09] |
|
| SPLCV-JP |
AB433787 |
SPLCV-[Japan:Kumamoto:1998] |
Japan |
GenBank |
SPLCV-JP[JR:Kum:98] |
|
AB433786 |
SPLCV-[Japan:Miyazaki:1996] |
Japan |
GenBank |
SPLCV-JP[JR:Miy:96] |
|
| SPLCV-SC |
HQ333138 |
SPLCV-[US:SC:646B-11] |
USA |
Zhang & Ling, 2011 |
SPLCV-SC[US:SC:646-B11:06] |
|
HQ333137 |
SPLCV-[US:SC:634–7] |
USA |
Zhang & Ling, 2011 |
SPLCV-SC[US:SC:634–7:06] |
|
|
HQ333135 |
SPLCV-[US:SC:377–23] |
USA |
Zhang & Ling, 2011 |
SPLCV-SC[US:SC:377–23:06] |
|
|
HQ333136 |
SPLCV-[US:SC:634–2] |
USA |
Zhang & Ling, 2011 |
SPLCV-SC[US:SC:634–2:06] |
|
| SPLCV-BR |
HQ393445 |
SPLCV-BR[BR:BA:CA:08] |
Brazil |
This study |
SPLCV-BR[BR:BA:CA:08] |
|
HQ393460 |
SPLCV-BR[BR:RO:Cac:08] |
Brazil |
This study |
SPLCV-BR[BR:RO:Cac:08] |
|
|
HQ393455 |
SPLCV-BR[BR:RO:OPO:08] |
Brazil |
This study |
SPLCV-BR[BR:RO:OPO:08] |
|
|
HQ393449 |
SPLCV-BR[BR:SE:Ria:08] |
Brazil |
This study |
SPLCV-BR[BR:SE:Ria:08] |
|
|
HQ393442 |
SPLCV-BR[BR:BA:Uru:08] |
Brazil |
This study |
SPLCV-BR[BR:BA:Uru:08] |
|
| SPLCV-PR |
DQ644563 |
SPLCV-[N4] |
Puerto Rico |
GenBank |
SPLCV-PR[PR:Me-N4:06] |
|
DQ644562 |
SPLCV-[PR80-N2] |
Puerto Rico |
GenBank |
SPLCV-PR[PR:80-N2:06] |
|
| SPLCV-PE |
HQ393456 |
SPLCV-PE[BR:RO:PV:08] |
Brazil |
This study |
SPLCV-PE[BR:RO:PV:08] |
|
HQ393464 |
SPLCV-PE[BR:RS:MP1:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP1:09] |
|
|
HQ393465 |
SPLCV-PE[BR:RS:MP2:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP2:09] |
|
|
HQ393467 |
SPLCV-PE[BR:RS:MP5:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP5:09] |
|
|
HQ393462 |
SPLCV-PE[BR:PE:CSF:08] |
Brazil |
This study |
SPLCV-PE[BR:PE:CSF:08] |
|
|
HQ393463 |
SPLCV-PE[BR:PE:CSF:08] |
Brazil |
This study |
SPLCV-PE[BR:PE:CSF:08] |
|
|
HQ393461 |
SPLCV-PE[BR:PB:PF:09] |
Brazil |
This study |
SPLCV-PE[BR:PB:PF:09] |
|
|
HQ393466 |
SPLCV-PE[BR:RS:MP4:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP4:09] |
|
|
HQ393469 |
SPLCV-PE[BR:RS:MP7:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP7:09] |
|
|
HQ393468 |
SPLCV-PE[BR:RS:MP6:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP6:09] |
|
|
HQ393470 |
SPLCV-PE[BR:RS:MP3:09] |
Brazil |
This study |
SPLCV-PE[BR:RS:MP3:09] |
|
| SPLCV-Fu |
FJ515898 |
SPLCV-[Fp-3] |
China |
Yang et al., 2009 |
SPLCV-Fu[CN:Fj:Fp3:07] |
|
FJ515897 |
SPLCV-[Fp-2] |
China |
Yang et al., 2009 |
SPLCV-Fu[CN:Fj:Fp2:07] |
|
|
FJ515896 |
SPLCV-[Fp-1] |
China |
Yang et al., 2009 |
SPLCV-Fu[CN:Fj:Fp1:07] |
|
| SPLCV-ES |
EU856364 |
SPLCV-ES[ES:CI:BG12:02] |
Spain |
Lozano et al., 2009 |
SPLCV-ES[ES:CI:BG12:02] |
|
EF456744 |
SPLCV-ES[ES:CI:BG6:02] |
Spain |
Lozano et al., 2009 |
SPLCV-ES[ES:CI:BG6:02] |
|
|
EU856366 |
SPLCV-ES[ES:CI:BG13:02] |
Spain |
Lozano et al., 2009 |
SPLCV-ES[ES:CI:BG13:02] |
|
| SPLCV-IT |
AJ586885 |
SPLCV-IT[IT:Sic:02] |
Italy |
Briddon et al., 2005 |
SPLCV-IT[IT:Sic:02] |
| SPLCLaV-BR |
FJ969833 |
SPLCV-RS1[BR:Tav1] |
Brazil |
Paprotka et al., 2010 |
SPLCLaV-BR[BR:RS:Tav1:07] |
| SPLCLaV-ES |
EF456746 |
SPLCLaV-[ES:CI:BG27:02] |
Spain |
Lozano et al., 2009 |
SPLCLaV-ES[ES:CI:BG27:02] |
|
EU839579 |
SPLCLaV-[ES:Mal:BG30:06] |
Spain |
Lozano et al., 2009 |
SPLCLaV-ES[ES:Mal:BG30:06] |
|
| SPLCBeV |
FN432356 |
SPLCBV-[India:West Bengal:2008] |
India |
GenBank |
SPLCBeV-[IN:Ben:08] |
| SPLCBRV |
FJ969832 |
SPLCV-CE[BR:For1] |
Brazil |
Paprotka et al., 2010 |
SPLCBRV-[BR:CE:For1:07] |
| SPLCCaV |
EF456742 |
SPLCCaV-[ES:CI:BG4:02] |
Spain |
Lozano et al., 2009 |
SPLCCaV-[ES:CI:BG4:02] |
|
EF456745 |
SPLCCaV-[ES:CI:BG7:02] |
Spain |
Lozano et al., 2009 |
SPLCCaV-[ES:CI:BG7:02] |
|
|
EU856365 |
SPLCCaV-[ES:CI:BG21:02] |
Spain |
Lozano et al., 2009 |
SPLCCaV-[ES:CI:BG21:02] |
|
|
FJ529203 |
SPLCCaV-[ES:CI:BG25:02] |
Spain |
Lozano et al., 2009 |
SPLCCaV-[ES:CI:BG25:02] |
|
| SPLCShV |
EU309693 |
SPLCV |
China |
GenBank |
SPLCShV-[CN:Sha:07] |
| SPLCGoV |
AF326775 |
SPLCGV-[16] |
USA |
Lotrakul et al., 2003 |
SPLCGoV-[US:Geo:16] |
| MerLCuV-US |
HQ333143 |
SPGVaV-[US:MS:1B-3] |
USA |
Zhang & Ling, 2011 |
MerLCuV-US[US:MS:1B-3:07] |
| MerLCuV-BR |
FJ969829 |
SPGVaV-PA[BR:Bel1] |
Brazil |
Paprotka et al., 2010 |
MerLCuV-BR[BR:PA:Bel1:07] |
| MerLCuV-PR |
DQ644561 |
MeLCV-[PR:N1] |
Puerto Rico |
GenBank |
MeLCuV-PR[PR:N1:06] |
| IYVMaV |
EU839576 |
IYVV-[ES:Mal:IG1:06] |
Spain |
Lozano et al., 2009 |
IYVMaV-[ES:Mal:IG1:06] |
| IYVV |
EU839578 |
IYVV-[ES:Mal:IG5:06] |
Spain |
Lozano et al., 2009 |
IYVV-[ES:Mal:IG5:06] |
|
AJ132548 |
IYVV-[ES:98] |
Spain |
Banks et al., 1999 |
IYVV-[ES:98] |
|
|
EU839577 |
IYVV-[ES:Mal:IG3:06] |
Spain |
Lozano et al., 2009 |
IYVV-[ES:Mal:IG3:06] |
|
| SPLCSPV |
HQ393477 |
SPLCSPV-[BR:AlvM:09] |
Brazil |
Albuquerque et al., 2011 |
SPLCSPV-[BR:SP:AlvM:09] |
| SPMV |
FJ969831 |
SPMaV-[BR:BSB1] |
Brazil |
Paprotka et al., 2010 |
SPMV-[BR:BSB1:07] |
| SPLCSCV |
HQ333144 |
SPLCSCV-[US:SC:648B-9] |
USA |
Zhang & Ling, 2011 |
SPLCSCV-[US:SC:648-B9:06] |
| SPLCUV |
FR751068 |
SPLCUV-[UG:KAMP:08] |
Uganda |
Wasswa et al., 2011 |
SPLCUV-[UG:KAMP:08] |
| SPLCESV |
EF456741 |
SPLCESV-[ES:CI:BG1:02] |
Spain |
Lozano et al., 2009 |
SPLCESV-[ES:CI:BG1:02] |
|
EF456743 |
SPLCESV-[ES:CI:BG5:02] |
Spain |
Lozano et al., 2009 |
SPLCESV-[ES:CI:BG5:02] |
|
|
HQ393448 |
SPLCESV-[BR:BA:Uti:08] |
Brazil |
This study |
SPLCESV-[BR:BA:Uti:08] |
|
|
FJ151200 |
SPLCESV-[ES:Mal:IG2:06] |
Spain |
Lozano et al., 2009 |
SPLCESV-[ES:Mal:IG2:06] |
|
|
HQ393458 |
SPLCESV-[BR:RO:Cac:08] |
Brazil |
This study |
SPLCESV-[BR:RO:Cac:08] |
|
| SPGVV-PB |
HQ393444 |
SPGVV-PB[BR:BA:CA:08] |
Brazil |
This study |
SPGVV-PB[BR:BA:CA:08] |
|
FJ969830 |
SPGVaV-PB1[BR:Sou1] |
Brazil |
Paprotka et al., 2010 |
SPGVV-PB[BR:PB:Sou1:07] |
|
| SPGVV-RO |
HQ393459 |
SPGVV-RO[BR:RO:Cac:08] |
Brazil |
This study |
SPGVV-RO[BR:RO:Cac:08] |
|
HQ393457 |
SPGVV-RO[BR:RO:PV2:08] |
Brazil |
This study |
SPGVV-RO[BR:RO:PV2:08] |
|
|
HQ393454 |
SPGVV-RO[BR:RO:OPO:08] |
Brazil |
This study |
SPGVV-RO[BR:RO:OPO:08] |
|
|
HQ393447 |
SPGVV-RO[BR:BA:Uti:08] |
Brazil |
This study |
SPGVV-RO[BR:BA:Uti:08] |
|
|
HQ393452 |
SPGVV-RO[BR:SE:PV1:08] |
Brazil |
This study |
SPGVV-RO[BR:SE:PV1:08] |
|
| SPLCCNV |
DQ512731 |
SPLCV-[CN] |
China |
Luan et al., 2007 |
SPLCCNV-[CN:05] |
| JF736657 | SPLCV-B3 | China | GenBank | SPLCCNV-[CN:Zhe:10] |
aThe isolates present in this study are shown in bold.
bComplete names of the viruses are shown in the Additional file 2.