Table 2.
Novel SNPS in the promoter region, and * I199V non synonymous SNP (previously published), including positions relative to transcription start site, base pair change and minor allele frequency in 3 crossbred pig populations: Large White, Duroc and Pietrain-sired F1 female offspring with a common Large White x Landrace background
|
SNP 1>2 |
NCBI SNP submission # |
SNP position relative to TSS |
Allele frequency |
||
|---|---|---|---|---|---|
| |
|
|
Large white X |
Duroc X |
Pietrain X |
| n = 30 | n = 23 | n = 32 | |||
| g.-995A>G |
472333124 |
−995 |
0.45 (G) |
0.28 (G) |
0.23 (G) |
| g.-968G>A |
472333125 |
−968 |
0.48 (A) |
0.28 (A) |
0.23 (A) |
| g.-671A>G |
472333126 |
−671 |
0.48 (G) |
0.28 (G) |
0.23 (G) |
| g.-583C>T |
472333127 |
−583 |
0.48 (T) |
0.28 (T) |
0.23 (T) |
| g.-480C>T |
472333128 |
−480 |
0.05 (T) |
0.05 (T) |
0.00 (T) |
| g.-461C>T |
472333129 |
−461 |
0.00 (T) |
0.17 (T) |
0.00 (T) |
| g.-311A>G |
472333130 |
−311 |
0.36 (G) |
0.07 (G) |
0.11 (G) |
| g.-221G>A |
472333131 |
−221 |
0.37 (A) |
0.07 (A) |
0.11 (A) |
| g.-158C>G |
472333132 |
−158 |
0.42 (C) |
0.30 (G) |
0.27 (G) |
| g.-58A>G |
472333133 |
−58 |
0.43 (A) |
0.30 (G) |
0.27 (G) |
| I199V | 2774 | 0.34 | 0.17 | 0.42 | |