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. 2012 Oct 31;7(10):e48429. doi: 10.1371/journal.pone.0048429

Table 1. The identification and the numbers of bacterial clones obtained from the samples; the classification reliability is given by confidence threshold (ct) value (RDP Classifier, [23]).

Order Family Genus ct % start XFa TFa XFc TFc XFv TFv XFp TFp
uncl. Acidobacteria_Gp2 3 1
Actinomycetales Brevibacteriaceae Brevibacterium 100 1
Micrococcaceae Kocuria 93–100 2 10 1
Sphingobacteriales uncl. Sphingobacteriales 3
Bacteroidetes inc. sedis Ohtaekwangia 100 1
Bacillales Bacillaceae Bacillus 99–100 1 17
Lysinibacillus 100 11 6
Oceanobacillus 100 5
uncl. Bacillaceae 5
Virgibacillus 81–89 7 12
Staphylococcaceae Staphylococcus 98–100 5
Lactobacillales Streptococcaceae Lactococcus 100 1
Rhizobiales Rhizobiaceae Rhizobium 100 1 1
uncl. Rhizobiales 8 1
Alphaproteobacteria inc. sedis Rhizomicrobium 100 1
Rhodospirillales Acetobacteraceae uncl. Acetobacteraceae 2
Burkholderiales Comamonadaceae Pelomonas 100 2
Enterobacteriales Enterobacteriaceae Pantoea 99 1
uncl. Enterobacteriaceae 2
Pseudomonadales Pseudomonadaceae Pseudomonas 84 1
Xanthomonadales Xanthomonadaceae Stenotrophomonas 100 13 20 7 2
Myxococcales uncl. Sorangiineae 2
uncl. Deltaproteobacteria 1

Legend: Start - samples from Tyrophagus putrescentiae originating from the rearing diet before the transfer to the fungal diets; X – samples form fungal cultures before mite introduction; T – samples from Tyrophagus putrescentiae on fungal diet sampled 7 days after the introduction; Fa -Fusarium avenaceum, Fc - F. culmorum, Fp - F. poae and Fv - F. verticillioides.