Table 4.
Statistics of reads mapped to assemblies
|
Proportion of reads |
Trinity |
Trans-ABySS |
||||
|---|---|---|---|---|---|---|
| AFSFASSS | AFSF + ASSS | AF + SF + AS + SS | AFSFASSS | AFSF + ASSS | AF + SF + AS + SS | |
| AF aligned |
83.83% |
87.53% |
89.17% |
93.62% |
92.44% |
91.48% |
| aligned more than 3 hits |
4.18% |
8.12% |
9.63% |
2.93% |
3.89% |
4.91% |
| uniquely aligned |
51.85% |
48.67% |
48.48% |
71.74% |
67.46% |
63.89% |
| AS aligned |
82.21% |
86.50% |
88.27% |
92.82% |
91.85% |
90.73% |
| aligned more than 3 hits |
4.23% |
8.35% |
10.45% |
3.00% |
3.85% |
4.93% |
| uniquely aligned |
50.67% |
48.48% |
47.70% |
70.94% |
66.89% |
62.74% |
| SF aligned |
80.06% |
86.13% |
88.61% |
93.55% |
92.23% |
91.41% |
| aligned more than 3 hits |
3.88% |
8.30% |
11.46% |
3.92% |
4.79% |
6.08% |
| uniquely aligned |
50.48% |
48.73% |
47.06% |
71.63% |
67.09% |
62.58% |
| SS aligned |
74.98% |
86.39% |
88.47% |
92.67% |
91.68% |
90.81% |
| aligned more than 3 hits |
3.81% |
7.83% |
10.71% |
3.19% |
3.98% |
5.07% |
| uniquely aligned |
46.73% |
51.45% |
49.93% |
72.35% |
68.42% |
64.23% |
| All aligned |
79.89% |
86.57% |
88.52% |
93.01% |
91.95% |
90.98% |
| aligned more than 3 hits |
4.04% |
8.15% |
10.56% |
3.19% |
4.04% |
5.15% |
| uniquely aligned | 49.60% | 49.47% | 48.41% | 71.61% | 67.48% | 63.35% |