Table 10.

Divergence matrix of Pneumocystis mtSSU rDNA sequences amplified from 15 bats (GenBank accession no. JQ061304 to JQ061318) and 2 lagomorph species (P. oryctolagi [47]; P. f. sp. Lepus europaeus, GenBank accession no. JF431106)^a

Host species	% of divergence from:
	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16
1. P. pipistrellus B(P6)
2. P. pipistrellus B(P3)	00.46
3. N. noctula B(NO19)	07.21	06.52
4. E. serotinus B	13.34	13.26	14.65
5. P. auritus B(OR3)	12.64	12.01	14.15	02.71
6. M. californicus NL	12.05	11.71	13.45	04.29	02.73
7. P. austriacus B	12.34	11.57	14.23	03.24	00.49	03.06
8. T. brasiliensis NL	17.25	14.63	14.58	13.31	13.43	13.06	13.53
9. T. brasiliensis M	17.10	14.54	14.50	13.57	13.68	13.29	13.78	00.89
10. T. brasiliensis A	18.06	15.05	15.76	13.64	14.00	13.23	13.71	01.53	01.83
11. G. soricina JG	14.76	13.67	15.02	12.68	12.44	13.25	12.72	16.28	15.81	16.24
12. A. hirsutus ES	13.91	13.46	14.71	12.01	11.66	11.34	11.75	15.36	14.92	15.77	08.41
13. P. parnellii ES	13.83	14.04	14.64	13.71	14.33	13.36	13.74	16.93	16.45	16.62	08.81	08.45
14. R. aegyptiacus P(12)	21.50	20.68	21.83	17.84	19.05	18.23	18.32	20.99	20.38	19.96	14.38	13.93	12.87
15. R. aegyptiacus P(26)	23.85	23.19	24.38	23.31	23.36	22.06	26.88	21.84	21.34	21.29	15.59	12.58	16.58	21.72
16. P. oryctolagi	25.12	25.25	25.79	23.97	23.34	23.60	23.48	23.32	23.50	24.15	18.50	16.33	20.22	23.02	24.77
17. P. f. sp. L. europaeus	19.30	19.01	20.30	18.10	18.21	17.83	17.67	17.43	17.41	17.16	16.30	13.82	18.43	19.29	20.87	09.76

^aNumbered column headings (1 to 16) correspond to numbered sources of host species DNA in the first column. Next to each bat species Latin name, the letter and number codes indicate geographic origin and reference number of samples, respectively. B, Bourges, France; NL, Nuevo León, Mexico; M, Michoacán, Mexico; A, Argentina; JG, Juxtlahuaca Grotto, Mexico; ES, El Salitre, Mexico; P, Zoological Park of La Palmyre, France. Letters and numbers in parentheses indicate a particular sample.