Table 9.
Divergence matrix of Pneumocystis mtLSU rDNA sequences amplified from 9 bat species (GenBank accession no. JQ039397 and JQ061293 to JQ061303), one rodent (P. murina from Mus musculus, GenBank accession no. AF257179), and one lagomorph species (P. oryctolagi from Oryctolagus cuniculus, GenBank accession no. S42915)a
| Host species | % of divergence from: |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | |
| 1. G. soricina FG | |||||||||||||
| 2. G. soricina JG | 00.35 | ||||||||||||
| 3. A. hirsutus ES | 09.64 | 08.87 | |||||||||||
| 4. T. brasiliensis M | 11.04 | 10.59 | 17.34 | ||||||||||
| 5. T. brasiliensis A | 10.35 | 09.92 | 17.57 | 00.78 | |||||||||
| 6. M. californicus LB | 11.88 | 12.33 | 14.82 | 08.15 | 09.21 | ||||||||
| 7. P. pipistrellus B(P6) | 14.11 | 13.12 | 14.37 | 12.15 | 12.72 | 07.42 | |||||||
| 8. N. noctula B(NO19) | 10.81 | 10.05 | 13.52 | 09.48 | 09.53 | 05.23 | 02.54 | ||||||
| 9. E. serotinus B(S1) | 11.22 | 10.57 | 13.84 | 06.91 | 07.91 | 02.00 | 06.83 | 04.76 | |||||
| 10. P. auritus B(OR3) | 12.75 | 12.03 | 15.09 | 08.93 | 09.30 | 03.53 | 05.44 | 05.52 | 01.94 | ||||
| 11. R. aegyptiacus P(34) | 15.60 | 15.19 | 20.58 | 18.30 | 18.40 | 20.19 | 23.19 | 17.68 | 18.22 | 20.14 | |||
| 12. R. aegyptiacus P(13) | 16.41 | 16.57 | 19.38 | 16.94 | 16.72 | 15.28 | 19.46 | 15.19 | 15.13 | 16.47 | 19.91 | ||
| 13. P. murina | 23.48 | 25.19 | 30.24 | 17.95 | 18.10 | 16.06 | 28.32 | 25.98 | 25.34 | 25.16 | 21.89 | 27.01 | |
| 14. P. oryctolagi | 19.91 | 21.96 | 28.98 | 18.24 | 17.75 | 16.04 | 27.29 | 24.37 | 26.72 | 26.19 | 18.59 | 28.66 | 17.48 |
Numbered column headings (1 to 13) correspond to numbered sources of host species DNA in the first column. Next to each bat species Latin name, the letter and number codes indicate geographic origin and reference number of samples, respectively. FG, French Guyana; B, Bourges, France; NL, Nuevo León, Mexico; M, Michoacán, Mexico; A, Argentina; LB, La Boca; JG, Juxtlahuaca Grotto, Mexico; ES, El Salitre, Mexico; P, Zoological Park of La Palmyre, France. Letters and numbers in parentheses indicate a particular sample.