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. 2012 Nov 1;8(11):e1002765. doi: 10.1371/journal.pcbi.1002765

Figure 1. Phylogenetic analysis of CPα (A) and CPβ (B).

Figure 1

Both trees represent protein bayesian phylogeny of particular genes. Numbers at nodes correspond to posterior probabilities from Bayesian analysis and the approximate likelihood ratio test with SH-like (Shimodaira-Hasegawa-like) support from maximum likelihood method, respectively. Circles represent support 100% by both methods, Missing values indicate support below 50%, dash indicates that a different topology was inferred by ML method. Branches were collapsed if inferred topology was not supported by both methods. Scale bar indicating the rates of substitutions/site is shown in corresponding tree. Abbreviations used: Agos – Ashbya gossypii, Alyr – Arabidopsis lyrata, Anig – Aspergillus niger Atha – Arabidopsis thaliana, Bden – Batrachochytrium dendrobatidis, Calb – Candida albicans, Ccin – Coprinopsis cinerea, Cele – Caenorhabditis elegans, Cint – Ciona intestinalis, Cneo – Cryptococcus neoformans, Cpos – Coccidioides posadasii, Ddis – Dictyostelium discoideum, Dhan – Debaryomyces hansenii, Dmel – Drosophila melanogaster, Dpur – Dictyostelium purpureum, Dpul – Daphnia pulex, Drer - Danio rerio, Ehis - Entamoeba histolytica, Ehux - Emiliania huxleyi, Ggal – Gallus gallus, Gzea – Gibberella zeae, Hsap – Homo sapiens, Mbre – Monosiga brevicollis, Mcir – Mucor circinelloides, Mmus – Mus musculus, Ngru – Naegleria gruberi, Ntab – Nicotiana tabacum, Nvec – Nematostella vectensis, Osat – Oryza sativa, Pbla – Phycomyces blakesleeanus, Pfal – Plasmodium falciparum, Phtr – Phaeodactylum tricornutum, Ppat – Physcomitrella patens, Pram – Phytophthora ramorum, Psoj – Phytophthora sojae, Ptet - Paramecium tetraurelia, Ptri – Populus trichocarpa, Pviv – Plasmodium vivax, Sbic – Sorghum bicolor, Scer – Saccharomyces cerevisiae, Slyc – Solanum lycopersicum, Spom – Schizosaccharomyces pombe, Smoe – Selaginella moellendorffi, Tadh – Trichoplax adherans, Tcru – Trypanosoma cruzi, Trub – Takifugu rubripes, Tthe – Tetrahymena thermophila, Tvag – Trichomonas vaginalis, Umay – Ustilago_maydis and Vvin – Vitis vinifera.