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. 2012 Nov 2;7(11):e46331. doi: 10.1371/journal.pone.0046331

Table 1. Time (seconds) needed to complete one update of all coordinates and to reach convergence in sets of gene expression data from blood disorders.

rNMF control
Data set, reference Data size iteration convergence iteration convergence
Acute Myeloid Leukemia [36] 22283×293 0.75 21.7 2.2 219.4
Acute Myeloid Leukemia [37] 54613×461 3.95 128.8 10.2 >600
Acute Myeloid Leukemia [38] 44692×162 0.96 17.3 1.5 163.6
Acute Lymphoblastic Leukemia [39] 22215×288 0.94 17.8 2.3 245.7
Multiple Myeloma [40] 54613×320 3.04 29.1 6.4 >600

All methods were implemented in C++ and identically initialized. Timings obtained on a 2.30 GHz Intel Core i7 2820QM CPU with 16 GB RAM. For convergence, we required a relative decrease in the objective function less than 10Inline graphic in successive iterations. Throughout, Inline graphic and Inline graphic.