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. 2012 Sep 17;12:168. doi: 10.1186/1471-2229-12-168

Table 1.

Overview of sequencing and assembly

Raw data  
 Total number of reads
71878419
 Number of unique high-quality reads
13300000
 Number of contigs obtained with Velvet/Oases/STM-
22363
Unigenes dataset
 
 Unigenes number
10338
 Total size (bp)
1787600
 Largest transcript length (bp)
1314
 N50 length (bp)
168
 No ATGC characters
18
 Average coverage per base
62
Predicted proteins
 
 Predicted CDS (partial/complete)
4472
Gene expression
 
 Reads mapped in transcripts
71148200
 Most expressed transcript (rpkm) 68250

bp: base pair; rpkm: read coverage normalized per million mapped nucleotides and the length of unigene.