Table 1.
Overview of sequencing and assembly
| Raw data | |
|---|---|
| Total number of reads |
71878419 |
| Number of unique high-quality reads |
13300000 |
| Number of contigs obtained with Velvet/Oases/STM- |
22363 |
| Unigenes dataset |
|
| Unigenes number |
10338 |
| Total size (bp) |
1787600 |
| Largest transcript length (bp) |
1314 |
| N50 length (bp) |
168 |
| No ATGC characters |
18 |
| Average coverage per base |
62 |
| Predicted proteins |
|
| Predicted CDS (partial/complete) |
4472 |
| Gene expression |
|
| Reads mapped in transcripts |
71148200 |
| Most expressed transcript (rpkm) | 68250 |
bp: base pair; rpkm: read coverage normalized per million mapped nucleotides and the length of unigene.