Table 1.
Details of simulated datasets
| Species and transcript type | Human |
Arabidopsis thaliana |
Neurospora crassa |
||||
|---|---|---|---|---|---|---|---|
| cDNA | CDS | cDNA | CDS | cDNA | CDS | ||
| Downloaded sequences | 32 661 | 37 337 | 30 576 | 33 200 | 17 096 | 10 038 | |
| GMAP: aligned sequences (100% identity) | 25 280 | 28 285 | 21 852 | 31 422 | 4376 | 9784 | |
| Spaln: aligned sequences (100% identity) | 24 518 | 29 030 | 20 714 | 31 703 | 4131 | 9663 | |
| Aligned sequences (100% identity) | 17 870 | 19 369 | 15 442 | 28 074 | 1994 | 8802 | |
| Percentage identity between transcript sequence and genomic sequence (%) | D0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 |
| D1 | 92.9 | 92.6 | 92.9 | 92.6 | 93.0 | 92.6 | |
| D2 | 86.8 | 86.4 | 86.7 | 86.4 | 86.7 | 86.4 | |
| D3 | 81.0 | 81.2 | 81.1 | 81.2 | 81.1 | 81.1 | |
| D4 | 76.1 | 76.8 | 76.0 | 76.9 | 76.0 | 76.8 | |
| D5 | 71.6 | 73.1 | 71.8 | 73.2 | 71.7 | 73.1 | |