Table 4.
Gene namea | a-CGH (%) | Gene namea | a-CGH (%) | Gene namea | a-CGH (%) | ||
---|---|---|---|---|---|---|---|
A. Asian | |||||||
ACAA1 |
Loss: 65 |
FRS2 |
Loss: 55 |
RPSA |
Loss: 68 |
||
ALDH18A1 |
Gain: 58 |
HADHA |
Loss: 63 |
RYBP* |
Gain: 73 |
||
ANKRD2 |
Gain: 58 |
HELLS |
Gain: 58 |
SCGN |
Loss: 80 |
||
APOB |
Loss: 58 |
HK1 |
Gain: 55 |
SERPINF1 |
Gain: 60 |
||
ARHGAP19 |
Gain: 60 |
ING4 |
Gain: 65 |
SNRK |
Loss: 65 |
||
AVPI1 |
Gain: 58 |
ITGA9 |
Loss: 65 |
SPG20 |
Loss: 65 |
||
AXUD1 |
Loss: 65 |
LBH |
Loss: 63 |
SUCLG2 |
Gain: 73 |
||
BLNK |
Gain: 58 |
LRIG1 |
Gain: 73 |
TNFRSF1A |
Gain: 65 |
||
CCK |
Loss: 68 |
LTBR |
Gain: 65 |
TRPC4 |
Loss: 65 |
||
CCNA1 |
Loss: 80 |
LYZ |
Loss: 55 |
UBE1C* |
Gain: 73 |
||
CRK |
Gain: 60 |
MAGI1 |
Gain: 73 |
UCN |
Loss: 63 |
||
CTDSPL |
Loss: 65 |
MITF* |
Gain: 73 |
VAMP1 |
Gain: 65 |
||
CX3CR1 |
Loss: 65 |
MLH1 |
Loss: 65 |
YWHAE |
Gain: 60 |
||
CYP2C19 |
Gain: 58 |
MNT |
Gain: 60 |
ZDHHC16 |
Gain: 58 |
||
DLEC1 |
Loss: 65 |
MyD88 |
Loss: 65 |
ZNF322A* |
Gain: 70 |
||
FKBP4 |
Gain: 65 |
PAFAH1B1* |
Gain: 60 |
ZNF35 |
Loss: 65 |
||
FOSL2 |
Loss: 63 |
PDCD6IP |
Loss: 65 |
ZNF384 |
Gain: 65 |
||
FOXM1 |
Gain: 65 |
RAD51AP1 |
Gain: 65 |
|
|
||
FRAT2 |
Gain: 58 |
RPA1 |
Gain: 60 |
|
|
||
B. Caucasian |
|
|
|
|
|
||
Gene namea |
a-CGH (%) |
Gene namea |
a-CGH (%) |
Gene namea |
a-CGH (%) |
Gene namea |
a-CGH (%) |
ABT1 |
Gain: 60 |
HESX1 |
Gain: 50 |
PROK2 |
Gain: 70 |
VGLL3 |
Loss: 70 |
ARF4 |
Gain: 50 |
HIST1H1A |
Gain: 60 |
PUM2 |
Gain: 55 |
WAPAL |
Loss: 70 |
ASPA |
Gain: 65 |
HIST1H1C |
Gain: 50 |
RAD18 |
Gain: 50 |
XDH* |
Loss: 50 |
CAV3 |
Gain: 50 |
HIST1H1D |
Gain: 50 |
RBBP7 |
Gain: 50 |
YY2 |
Gain: 60 |
CCR1 |
Gain: 60 |
HIST1H1E |
Gain: 50 |
REPS2 |
Gain: 50 |
ZBTB47 |
Gain: 55 |
CCR5 |
Gain: 60 |
HIST1H1T |
Gain: 50 |
RhoB |
Gain: 55 |
ZFX |
Gain: 50 |
CD2AP |
Gain: 50 |
HIST1H4B |
Gain: 60 |
ROBO1 |
Gain: 65 |
ZNF165 |
Gain: 55 |
CDCP1 |
Gain: 60 |
HIST1H4F |
Gain: 50 |
ROBO2 |
Gain: 70 |
ZNF167 |
Gain: 60 |
CGGBP1 |
Loss: 80 |
LMCD1 |
Gain: 50 |
RYBP* |
Gain: 70 |
ZNF184 |
Gain: 50 |
CLEC3B |
Gain: 60 |
LTF |
Gain: 60 |
SCML1 |
Gain: 50 |
ZNF187 |
Gain: 55 |
CNTN4 |
Gain: 55 |
MBTPS2 |
Gain: 60 |
SCML2 |
Gain: 60 |
ZNF193 |
Gain: 55 |
DCLK3 |
Loss: 65 |
MDGA1 |
Loss: 85 |
SNCG |
Loss: 70 |
ZNF197 |
Gain: 60 |
DDX1 |
Gain: 55 |
MITF* |
Gain: 70 |
SNRK |
Gain: 60 |
ZNF322A* |
Gain: 50 |
DDX53 |
Gain: 60 |
MYCN |
Gain: 55 |
SOX4 |
Gain: 70 |
ZNF35 |
Gain: 60 |
EDEM1 |
Gain: 50 |
NT5C1B |
Gain: 55 |
SS18L2 |
Gain: 55 |
ZNF391 |
Gain: 50 |
EIF4E3 |
Gain: 70 |
NTSR2 |
Gain: 50 |
TMF1 |
Gain: 70 |
ZNF445 |
Gain: 60 |
ESD |
Gain: 70 |
NUFIP1 |
Gain: 80 |
TNFSF11 |
Gain: 80 |
ZNF452 |
Gain: 50 |
FAM107A |
Gain: 50 |
PAFAH1B1* |
Gain: 70 |
TRPM6 |
Gain: 60 |
ZNF501 |
Gain: 60 |
FOXJ2 |
Loss: 50 |
PGBD1 |
Gain: 55 |
TSC22D1 |
Gain: 90 |
ZNF502 |
Gain: 60 |
FOXP1 |
Gain: 70 |
POLA1 |
Gain: 60 |
UBE1C* |
Gain: 70 |
ZNF660 |
Gain: 60 |
GDF7 | Gain: 55 | PRL | Gain: 50 | UBP1 | Loss: 80 | ZNF662 | Gain: 60 |
a The common cancer-related genes in both Asian and Caucasian are labeled with asterisk (*), and the detailed description of all genes is shown in Additional file 5: Table S4.