TABLE 1.
Probe | Sequence | Specificity | % Formamide | Reference |
---|---|---|---|---|
EUB338c | GCTGCCTCCCGTAGGAGT | Most bacteria | 20 | 1 |
ALFIba | CGTTCGYTCTGAGCCA | Alphaproteobacteria | 20 | 23 |
BET42ab | GCCTTCCCACTTCGTTT | Betaproteobacteria | 35 | 23 |
GAM42ab | GCCTTCCCACATCGTTT | Gammaproteobacteria | 35 | 23 |
HGC69ab | TATAGTTACCACCGCCGT | Actinobacteria | 25 | 33 |
LGC354b | YSGAAGATTCCCTACTGC | Some Firmicutes | 35 | 24 |
CF319ab | TGGTCCGTGTCTCAGTAC | Cytophaga-Flavobacterium of Bacteroidetes | 35 | 23 |
PLA46b | GACTTGCATGCCTAATCC | Planctomycetales | 30 | 28 |
ARC915b | GTGCTCCCCCGCCAATTCCT | Archaea | 20 | 34 |
NonEub338c | ACTCCTACGGGAGGCAGC | Negative control | 20 | 1 |
Fluorochrome, fluorescein.
Fluorochrome, Cy3.
Fluorochrome, Cy5.