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. 2004 Feb;70(2):1008–1016. doi: 10.1128/AEM.70.2.1008-1016.2004

TABLE 2.

Probe and target sequences

Name	Sequence^b
A337 (TaqMan probe)	5′TTCTACTGGTGGTCRCACTACCCCATCAACT3′
Targets
Nitrosomonas europaea	3′AAGATGACCACCAGTGTGATGGGGTAGTTGA5′
Nitrosospira tenuis	3′AAAATGACCACCAGCGTGATGGGGTACTCGA5′
Nitrosospira multiformis	3′AAGATGACCACCAGCGTGATGGGGTACTTGA5′
Nitrosospira sp. strain NpAV	3′AAGATGACCACCAGCGTGATGGGCTAGTTGA5′
Nitrosospira sp. strain 39-19	3′AAGATGACCACCAGCGTGTTGGGGTAGTCGA5′
Nitrosospira sp. strain 24C	3′AAGATGACCACCAGCGTGATGGGGTAGTTGA5′
Nitrosospira briensis	3′AAGATGACCACCAGCGTGATGGGGTAGTTGA5′
Methlyococcus capsulatus^a	3′AAGACCCCGACCTGGATGAAGGGCTAGTTGA5′
Methylosinus trichosporium OB3b^a	3′AAGACCCCGACCTGGATAAAGGGCTAGTCGG5′
Methylocystis sp. strain M^a	3′AAGACCCCGACCTGGATGAAGGGCTAGTCGG5′

^a

Methane-oxidizing bacterium.

^b

Underlined bases are mismatches with the probe.