Table 3. ORFs and predicted proteins of pOENI-1.
ORF | Position | %GC | Protein | Size (aa) | Predicted function | Best blast (organism, GenBank accession) | % identity |
1 | 108-1619 | 44,0 | TraI | 503 | DNA topoisomerase IA, TraI | L. pentosus, CCB84017 | 95 |
2 | 1742-1957 | 38,9 | HP | 71 | Hypothetical protein | L. brevis, ZP_03940833 | 90 |
3 | 1961-3082 | 42,7 | LtrC | 373 | LtrC-like protein | L. helveticus, ADX71206 | 96 |
4 a | 3096-4053 | 36,9 | Gdh | 319 | Glycerate dehydrogenase | Lc. kimchii, YP_003621246 | 70 |
5 | 4558-4172 | 42,1 | HP | 128 | Hypothetical protein | P. claussenii, AEV96201 | 94 |
6 | 4871-4551 | 40,5 | HP | 106 | Hypothetical protein | L. brevis, ZP_03940921 | 99 |
7 | 5865-5281 | 52,7 | TetR | 194 | Transcriptional regulator, TetR | L.mali, ZP_09449471 | 99 |
8 | 6041-6787 | 53,3 | TauE | 248 | Putative permease TauE | L. mali, ZP_09449472 | 99 |
9 | 7365-7952 | 41,8 | Res | 195 | Resolvase | L. crispatus, YP_003601011 | 99 |
10 | 9124-8192 | 35,3 | LysR | 310 | Transcriptional regulator, LysR | O. oeni, ZP_01543901 | 100 |
11 | 9267-10448 | 42,1 | Oye | 393 | NADH: flavin oxidoreductase | O. oeni, ZP_01543900 | 100 |
12 | 11258-10575 | 45,5 | Tnp | 227 | Transposase | O. oeni, ZP_01543898 | 100 |
13 | 11927-11649 | 41,6 | ParB | 92 | Partition protein, ParB | L. casei, YP_794449 | 100 |
14 | 12831-11908 | 40,8 | ParA | 307 | Partition protein, ParA | L. casei, YP_794448 | 99 |
15 | 13334-14449 | 39,5 | RepA | 371 | Replication protein, RepA | P. claussenii, AEV96162 | 76 |
16 | 14709-14990 | 42,9 | RelB | 93 | Addiction module antitoxin, RelB | L. hilgardii, ZP_03954201 | 100 |
17 | 14980-15486 | 35,9 | PemK | 168 | Addiction module toxin, PemK | L. paracasei, ABA12818 | 99 |
18 | 15754-15476 | 34,8 | HP | 92 | Hypothetical protein | L. brevis, YP_796419 | 97 |
19 | 15985-15776 | 30,0 | HP | 69 | Hypothetical protein | L. mali, ZP_0944951 | 90 |
20 a | 16256-18317 | 38,7 | TraA | 687 | Putative nickase, TraA | L. pentosus, CCC15328 | 95 |
pseudogenes, the characteristics of hypothetical full-length genes and proteins are provided.