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. 2012 Nov 5;7(11):e49082. doi: 10.1371/journal.pone.0049082

Table 3. ORFs and predicted proteins of pOENI-1.

ORF Position %GC Protein Size (aa) Predicted function Best blast (organism, GenBank accession) % identity
1 108-1619 44,0 TraI 503 DNA topoisomerase IA, TraI L. pentosus, CCB84017 95
2 1742-1957 38,9 HP 71 Hypothetical protein L. brevis, ZP_03940833 90
3 1961-3082 42,7 LtrC 373 LtrC-like protein L. helveticus, ADX71206 96
4 a 3096-4053 36,9 Gdh 319 Glycerate dehydrogenase Lc. kimchii, YP_003621246 70
5 4558-4172 42,1 HP 128 Hypothetical protein P. claussenii, AEV96201 94
6 4871-4551 40,5 HP 106 Hypothetical protein L. brevis, ZP_03940921 99
7 5865-5281 52,7 TetR 194 Transcriptional regulator, TetR L.mali, ZP_09449471 99
8 6041-6787 53,3 TauE 248 Putative permease TauE L. mali, ZP_09449472 99
9 7365-7952 41,8 Res 195 Resolvase L. crispatus, YP_003601011 99
10 9124-8192 35,3 LysR 310 Transcriptional regulator, LysR O. oeni, ZP_01543901 100
11 9267-10448 42,1 Oye 393 NADH: flavin oxidoreductase O. oeni, ZP_01543900 100
12 11258-10575 45,5 Tnp 227 Transposase O. oeni, ZP_01543898 100
13 11927-11649 41,6 ParB 92 Partition protein, ParB L. casei, YP_794449 100
14 12831-11908 40,8 ParA 307 Partition protein, ParA L. casei, YP_794448 99
15 13334-14449 39,5 RepA 371 Replication protein, RepA P. claussenii, AEV96162 76
16 14709-14990 42,9 RelB 93 Addiction module antitoxin, RelB L. hilgardii, ZP_03954201 100
17 14980-15486 35,9 PemK 168 Addiction module toxin, PemK L. paracasei, ABA12818 99
18 15754-15476 34,8 HP 92 Hypothetical protein L. brevis, YP_796419 97
19 15985-15776 30,0 HP 69 Hypothetical protein L. mali, ZP_0944951 90
20 a 16256-18317 38,7 TraA 687 Putative nickase, TraA L. pentosus, CCC15328 95
a

pseudogenes, the characteristics of hypothetical full-length genes and proteins are provided.