Table IV. Additively induced Brachypodium genes by SPMV.
The relative unlogged fold change (≥2-fold) in gene expression of PMV and PMV+SPMV infection compared with mock are indicated. Only gene expression changes that are statistically significant (P value < 0.05) between PMV and PMV+SPMV infections are listed. The gene descriptions were deduced from Pfam and PANTHER functional annotations obtained using the Phytozome (Goodstein et al., 2012). An asterisk represents genes that are also present in other tables and figures elsewhere in the article.
| Gene ID | PMV | PMV+SPMV | Description |
|---|---|---|---|
| Bradi3g31720* | 117.20 | 164.83 | Glutathione S-transferase, N-terminal domain |
| Bradi2g49067 | 78.57 | 119.88 | Unknown |
| Bradi1g74970 | 73.33 | 96.13 | Unknown |
| Bradi3g16650 | 52.07 | 65.42 | Unknown |
| Bradi2g48160 | 47.15 | 61.90 | Eukaryotic porin |
| Bradi3g31727 | 40.47 | 53.87 | Unknown |
| Bradi1g06980 | 38.47 | 50.74 | DnaJ domain |
| Bradi2g44820 | 21.24 | 27.73 | UDP-glucoronosyl and UDP-glucosyl transferase |
| Bradi1g21921 | 16.93 | 22.52 | Sulfotransferase4B (ST4B) |
| Bradi2g10857 | 12.29 | 20.97 | Unknown |
| Bradi1g59240 | 9.75 | 18.45 | Unknown |
| Bradi3g21270 | 10.61 | 15.96 | Protein of unknown function (DUF1218) |
| Bradi3g60470 | 6.61 | 11.70 | Metallo-β-lactamase superfamily |
| Bradi3g28120 | 7.78 | 10.83 | Unknown |
| Bradi1g69140 | 7.64 | 10.25 | RST domain of plant C terminus |
| Bradi5g26080 | 8.36 | 10.15 | Dihydroorotate dehydrogenase |
| Bradi3g09120 | 5.93 | 8.87 | Peroxidase |
| Bradi3g53227 | 6.25 | 8.17 | Unknown |
| Bradi2g48540 | 6.55 | 7.94 | Unknown |
| Bradi3g49330* | 4.99 | 7.92 | Ubiquitin family |
| Bradi1g57657 | 5.45 | 7.01 | Unknown |
| Bradi2g18630 | 5.40 | 6.62 | Eukaryotic porin |
| Bradi3g38050 | 4.00 | 6.17 | Carboxylesterase, α/β hydrolase fold |
| Bradi3g48590 | 4.47 | 5.97 | Lipocalin/cytosolic fatty-acid binding protein family |
| Bradi5g08520 | 4.21 | 5.93 | K+ potassium transporter |
| Bradi3g14140 | 3.91 | 5.05 | Transmembrane amino acid transporter protein, Trp/Tyr permease family |
| Bradi2g14610 | 3.38 | 5.03 | Holliday junction DNA helicase ruvB N terminus, ATPase family |
| Bradi1g77680 | 3.39 | 4.83 | Unknown |
| Bradi1g00700 | 3.70 | 4.80 | Sugar (and other) transporter, major facilitator superfamily |
| Bradi4g38690* | 3.68 | 4.76 | Protein kinase domain, universal stress protein family, U-box domain |
| Bradi3g22880 | 3.27 | 4.76 | MatE protein, multidrug resistance pump |
| Bradi4g27850* | 3.40 | 4.67 | AP2 domain |
| Bradi2g55892 | 3.48 | 4.59 | Unknown |
| Bradi2g44150* | 2.74 | 4.30 | Cytochrome P450 |
| Bradi2g50630 | 3.55 | 4.29 | NLI interacting factor-like phosphatase |
| Bradi1g57690* | 3.38 | 4.23 | Legume lectin domain, protein kinase domain |
| Bradi4g24590* | 3.20 | 4.19 | Protein kinase domain |
| Bradi3g21310 | 3.33 | 4.16 | Miro-like protein, RAS family, EF hand associated |
| Bradi1g11780 | 3.24 | 4.15 | ABC1 family |
| Bradi2g47020 | 3.01 | 4.05 | Unknown |
| Bradi2g44200* | 2.48 | 3.96 | Cytochrome P450 |
| Bradi3g16450 | 3.24 | 3.92 | SPFH domain/Band7 family, Stomatin-like integral membrane domain |
| Bradi3g09620 | 2.60 | 3.91 | Unknown |
| Bradi3g52367 | 2.94 | 3.66 | Unknown |
| Bradi1g45470* | 2.50 | 3.66 | AP2 domain |
| Bradi5g12530 | 2.92 | 3.59 | SPFH domain/Band7 family, Stomatin-like integral membrane domain |
| Bradi1g10840 | 2.62 | 3.53 | UDP-glucoronosyl and UDP-glucosyl transferase |
| Bradi1g26850 | 2.44 | 3.35 | C2 domain, Ca2+-dependent phospholipid-binding protein |
| Bradi1g20995 | 2.48 | 3.31 | Unknown |
| Bradi5g07380 | 2.45 | 3.10 | Cleavage site for pathogenic type III effector avirulence factor Avr |
| Bradi1g14350 | 2.49 | 3.09 | MatE protein, multidrug resistance pump |
| Bradi2g20687* | 2.37 | 3.00 | d-Man binding lectin, S-locus glycoprotein, RLK plant type |
| Bradi3g52830 | 2.40 | 2.94 | ATPase family associated with various cellular activities (AAA) |
| Bradi2g51592 | 2.29 | 2.90 | Unknown |
| Bradi5g02980* | 3.51 | 2.82 | d-Man binding lectin, protein kinase domain |
| Bradi3g47580 | 2.14 | 2.62 | Zinc finger, ZZ type, UBA/TS-N domain, ubiquitin-associated |
| Bradi3g48690 | 2.02 | 2.52 | Unknown |