Table V. Additively down-regulated Brachypodium genes by SPMV.
The relative unlogged fold change (≥2-fold) in gene expression of PMV and PMV+SPMV infection compared with mock is indicated. Only gene expression changes that are statistically significant (P value < 0.05) between PMV and PMV+SPMV infections are listed. The gene descriptions were deduced from Pfam and PANTHER functional annotations obtained using the Phytozome (Goodstein et al., 2012). An asterisk represents genes that are also present in other tables and figures elsewhere in the article.
| Gene ID | PMV | PMV+SPMV | Description |
|---|---|---|---|
| Bradi5g05110* | −9.09 | −33.33 | Helix-loop-helix DNA-binding domain |
| Bradi4g42540* | −8.33 | −14.29 | Cytochrome P450 |
| Bradi4g36601 | −3.70 | −12.50 | Aquaporin transporter |
| Bradi2g05510* | −3.45 | −6.67 | WRKY DNA-binding domain |
| Bradi5g17500 | −3.33 | −6.25 | NUDIX domain, phosphohydrolase |
| Bradi2g55050 | −4.00 | −5.88 | Multicopper oxidase |
| Bradi1g12130* | −2.63 | −5.26 | Chlorophyll a/b binding protein |
| Bradi2g05832 | −2.50 | −4.55 | Unknown |
| Bradi2g20380* | −2.78 | −4.55 | Photosystem II reaction center W protein (PsbW) |
| Bradi2g54430 | −2.86 | −4.35 | Unknown |
| Bradi1g42670* | −2.63 | −4.35 | Chlorophyll a/b binding protein |
| Bradi3g32200 | −2.94 | −4.17 | Unknown |
| Bradi2g56030 | −2.56 | −4.00 | Fru-1-6-bisphosphatase |
| Bradi3g37680 | −2.56 | −3.85 | Cupin domain |
| Bradi4g20500 | −2.38 | −3.85 | GUN4-like, magnesium-protoporphyrin IX synthesis |
| Bradi2g62520 | −2.78 | −3.70 | Major intrinsic protein, aquaporin |
| Bradi1g68210 | −2.63 | −3.70 | Senescence-associated protein |
| Bradi3g07190* | −2.56 | −3.70 | Chlorophyll a/b binding protein |
| Bradi5g22290 | −2.17 | −3.57 | Aminomethyltransferase folate-binding domain |
| Bradi3g10770 | −2.56 | −3.33 | Unknown |
| Bradi3g04930 | −2.17 | −3.23 | rRNA adenine dimethylase, ubiE/COQ5 methyltransferase family |
| Bradi2g26280 | −2.50 | −3.23 | Unknown |
| Bradi3g60920 | −2.00 | −3.13 | NAD-dependent epimerase/dehydratase family, male sterility protein |
| Bradi1g55720 | −2.08 | −2.94 | Leu-rich repeat Ser/Thr phosphatase |
| Bradi5g01737 | −2.13 | −2.86 | Unknown |
| Bradi3g13970* | −2.13 | −2.86 | Photosystem II protein Y (PsbY) |
| Bradi4g45310* | −2.22 | −2.78 | Protein kinase domain |
| Bradi1g24870* | −2.00 | −2.63 | Chlorophyll a/b binding protein |
| Bradi5g17480* | −2.04 | −2.63 | AP2 domain |