Table I. Summary of the Arabidopsis PAT gene family.
AGI, Arabidopsis Genome Initiative.
Gene Name | AGI No. | NCBI Nucleotide Accession | NCBI Protein Accession | Uniprot Protein Accession | Nucleotide Lengtha | Amino Acids | Protein Size in kD |
---|---|---|---|---|---|---|---|
AtPAT01 | At3g56920 | NM_115551 | NP_191251 | B3DN87 | 1,017 | 338 | 39 |
AtPAT02 | At2g40990 | NM_129644 | NP_181632 | O80685 | 1,236 | 411 | 47 |
AtPAT03 | At5g05070 | NM_120589 | NP_196126 | Q5PNZ1 | 1,242 | 413 | 48 |
AtPAT04 | At3g56930 | NM_115552 | NP_191252 | Q9M1K5 | 1,434 | 477 | 55 |
AtPAT05 | At3g48760 | NM_114735 | NP_190445 | Q9M306 | 1,431 | 476 | 54 |
AtPAT06 | At5g41060 | NM_123471 | NP_198922 | Q9FLM3 | 1,264 | 410 | 46 |
AtPAT07 | At3g26935 | NM_180307 | NP_850638 | Q0WQK2 | 1,332 | 443 | 50 |
AtPAT08 | At4g24630 | NM_118596 | NP_194194 | Q9SB58 | 1,244 | 407 | 47 |
AtPAT09 | At5g50020 | JF792493 | AEF58502 | F6MDM7 | 1,245 | 414 | 48 |
AtPAT10 | At3g51390 | NM_114998 | NP_566950 | Q7XA86 | 1,023 | 340 | 39 |
AtPAT11 | At3g18620 | NM_112748 | NP_188492 | Q9LIH7 | 1,038 | 345 | 38 |
AtPAT12 | At4g00840 | NM_116310 | NP_567193 | Q5M757 | 876 | 291 | 33 |
AtPAT13 | At4g22750 | NM_118402 | NP_567668 | Q94C49 | 909 | 302 | 34 |
AtPAT14 | At3g60800 | NM_115944 | NP_191639 | Q8VYP5 | 924 | 307 | 35 |
AtPAT15 | At5g04270 | NM_120509 | NP_196047 | Q500Z2 | 765 | 254 | 29 |
AtPAT16 | At3g09320 | NM_111766 | NP_566348 | Q93VV0 | 861 | 286 | 32 |
AtPAT17 | At3g04970 | NM_111369 | NP_187148 | Q3EBC2 | 1,194 | 397 | 45 |
AtPAT18 | At4g01730 | NM_116403 | NP_192082 | Q9M115 | 1,499 | 499 | 57 |
AtPAT19 | At4g15080 | NM_117595 | NP_193244 | Q8L5Y5 | 2,157 | 718 | 79 |
AtPAT20b | At3g22180 | NM_113115 | NP_188857 | Q9LIE4 | 2,121 | 706 | 77 |
AtPAT21 | At2g33640 | NM_128924 | NP_180922 | Q6DR03 | 1,698 | 565 | 62 |
AtPAT22 | At1g69420 | NM_202385 | NP_974114 | Q9C533 | 1,791 | 596 | 66 |
AtPAT23 | At2g14255 | NM_201724 | NP_973453 | Q3EC11 | 1,697 | 536 | 60 |
AtPAT24c | At5g20350 | NM_122042 | NP_197535 | Q52T38 | 1,860 | 620 | 68 |
Verified in this study.
PAT20 was not amplified from cDNA, but indirectly obtained by expressing a genomic fragment in N. benthamiana and reamplifying from a cDNA.
A mutant allele was designated as tip1 (Hemsley et al., 2005).